Methods of diagnosing and treating cervical cancer based on expression of farnesyl pyrophosphate synthase

ABSTRACT

The present invention is related to diagnostic tests or rapid detections of different types of cancer, especially cervical cancer and precancerous lesions. Especially, the invention relates to specific and useful protein biomarkers for the detection of said diseases, and to the methods for determination and detection of said biomarkers.

CROSS-REFERENCE TO RELATED APPLICATIONS

This application is a Continuation of U.S. patent application Ser. No.16/879,748 filed May 20, 2020, which claims priority and the benefitunder 35 USC § 119(a) of International Application, Mexican PatentApplication No. MX/a/2019/005940 filed May 21, 2019, the entire contentsof which is incorporated herein by reference in its entirety.

INCORPORATION OF SEQUENCE LISTING

The material in the accompanying sequence listing is hereby incorporatedby reference into this application. The accompanying sequence listingtext file, name ATSO1100_2_Sequence_Listing.txt, was created on Oct. 13,2020, and is 748 kb. The file can be accessed using Microsoft Word on acomputer that uses Windows OS.

BACKGROUND OF THE INVENTION Field of the Invention

The present invention relates generally to methods of diagnosing andtreating cervical cancer in a subject and more specifically tobiomarkers used to diagnose cervical cancer.

Background Information

Cervical cancer (CC) is one of the most common cancers among womenworldwide. Among the risk factors related to this disease are infectionwith the human papilloma virus (HPV), the microbiome, risky sexualbehavior, multiparity, smoking, prolonged use of hormonal contraceptivesand environmental factors. Cervical cancer is a disease of slow andprogressive evolution. It is preceded by cervical intraepithelialneoplasms, which are the lesions considered to be the prelude to thiscondition. These malignancies or injuries can occur even 10 years beforecervical cancer develops.

Human papillomavirus infection (HPV) causes more than 90% of cases.Other risk factors include smoking, a weak immune system, birth controlpills, starting sex at a young age, and having many sexual partners, butthese are less important. Cervical cancer typically develops fromprecancerous changes over 10 to 20 years. About 90% of cervical cancercases are squamous cell carcinomas, 10% are adenocarcinoma, and a smallnumber are other types. Diagnosis is typically by cervical screeningfollowed by a biopsy. Medical imaging is then done to determine whetheror not the cancer has spread.

Current methods of diagnosing cervical cancer are invasive. The mostcommon method of diagnosing cervical cancer is by a smear screening withPapanicolaou staining, i.e. Pap smear. There is a need for non-invasivemethods of detecting cervical cancer.

SUMMARY OF THE INVENTION

The present invention is based on the seminal discovery that acollection of biomarkers can be used for the diagnosis of cervicalcancer.

In one embodiment, the present invention is directed to methods ofdetecting at least one polypeptide in a sample from a subject; whereinthe at least one polypeptide is selected from Farnesyl pyrophosphatesynthase, neurofibromin I, Glyceraldehyde-3 phosphate dehydrogenase,Protein 1 containing fibronectin domain type III, Eukaryotic initiationfactor 4A-I, L-lactate dehydrogenase chain B, Nuclear heterogeneousRibonucleoprotein A1, 1-like protein 1 polycystic kidney disease, HeatShock Protein Cognate 71 kDa, Ankyrin-3, Rho 23 GTPase-activatingprotein, Cytoskeletal Keratin 78 type II, Alpha-3 collagen chain (VI),Beta subunit of proteasome type-5, Heterogeneous nuclearribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 or a fragment thereof; or a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence selected from SEQ ID NOs: 1-20 or a fragmentthereof; and diagnosing cervical cancer based on the detection of the atleast one polypeptide.

In one aspect, the sample is selected from the group consisting ofblood, plasma, urine, saliva, sweat, organ biopsy, cerebrospinal fluid(CSF), tear, vaginal fluid, feces, skin, and hair. In certain aspectsthe sample is a blood sample and the subject is human.

In another aspect, the at least one polypeptide is Farnesylpyrophosphate synthase or a fragment thereof and at least onepolypeptide selected from neurofibromin I, Glyceraldehyde-3 phosphatedehydrogenase, Protein 1 containing fibronectin domain type III,Eukaryotic initiation factor 4A-I, L-lactate dehydrogenase chain B,Nuclear heterogeneous Ribonucleoprotein A1, 1-like protein 1 polycystickidney disease, Heat shock protein cognate 71 kDa, Ankyrin-3, Rho 23GTPase-activating protein, Cytoskeletal Keratin 78 type II, Alpha-3collagen chain (VI), Beta subunit of proteasome type-5, Heterogeneousnuclear ribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 or a fragment thereof. In an additionalaspect, the at least one polypeptide is a polypeptide having at leastabout 70% sequence identity to a polypeptide having the amino acidsequence of SEQ ID NO:1 or a fragment thereof and at least onepolypeptide with at least about 70% sequence identity to a polypeptidehaving the amino acid sequence selected from SEQ ID NOs:2-20 and afragment thereof.

In a further aspect, the detecting is by protein microarray,fluorescence detection, flow cytometry, microfluidic device, lateralflow assay, vertical flow assay or immunoassay. In a specific aspect,the detecting is by lateral flow assay. In one aspect, the method alsoincludes administering a treatment to the subject. In an additionalaspect, the treatment is surgery, radiation, chemotherapy, targetedtherapy and/or immunotherapy.

In another embodiment, the present invention provides a method ofdiagnosing cervical cancer in a subject by detecting at least onepolypeptide in a sample from a subject; wherein the at least onepolypeptide is selected from Farnesyl pyrophosphate synthase,neurofibromin 1, Glyceraldehyde-3 phosphate dehydrogenase, Protein 1containing fibronectin domain type III, Eukaryotic initiation factor4A-I, L-lactate dehydrogenase chain B, Nuclear heterogeneousRibonucleoprotein A1, 1-like protein 1 polycystic kidney disease, Heatshock protein cognate protein 71 kDa, Ankyrin-3, Rho 23GTPase-activating protein, Cytoskeletal Keratin 78 type II, Alpha-3collagen chain (VI), Beta subunit of proteasome type-5, Heterogeneousnuclear ribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 or a fragment thereof; or a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence selected from SEQ ID NOs: 1-20 or a fragmentthereof, and diagnosing cervical cancer based on the detection of atleast one polypeptide.

In one aspect, the sample is blood, plasma, urine, saliva, sweat, organbiopsy, cerebrospinal fluid (CSF), tear, vaginal fluid, feces, skin, andhair. In certain aspects, the sample is a blood sample and the subjectis human.

In an additional aspect, the at least one polypeptide is Farnesylpyrophosphate synthase or a fragment thereof and at least onepolypeptide selected from neurofibromin I, Glyceraldehyde-3 phosphatedehydrogenase, Protein 1 containing fibronectin domain type III,Eukaryotic initiation factor 4A-I, L-lactate dehydrogenase chain B,Nuclear heterogeneous Ribonucleoprotein A1, 1-like protein 1 polycystickidney disease, Cognate thermal shock protein 71 kDa, Ankyrin-3, Rho 23GTPase-activating protein, Cytoskeletal Keratin 78 type II, Alpha-3collagen chain (VI), Beta subunit of proteasome type-5, Heterogeneousnuclear ribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 or a fragment thereof. In a furtheraspect, the at least one polypeptide is a polypeptide with at leastabout 70% sequence identity to a polypeptide having the amino acidsequence of SEQ ID NO:1 or a fragment thereof and at least onepolypeptide with at least about 70% sequence identity to a polypeptidehaving an amino acid sequence selected from SEQ ID NOs:2-20 or afragment thereof.

In another aspect, the detecting is by protein microarray, fluorescencedetection, flow cytometry, microfluidic device, lateral flow assay,vertical flow assay or immunoassay. In a specific aspect, the detectingis by lateral flow assay. In one aspect, the method also includesadministering a treatment to the subject. In certain aspects, thetreatment is surgery, radiation, chemotherapy, targeted therapy and/orimmunotherapy.

In an additional embodiment, the present invention provides a method oftreating cervical cancer in a subject in need thereof, the method isdetecting at least one polypeptide in a sample from a subject; whereinthe at least one polypeptide is selected from Farnesyl pyrophosphatesynthase, neurofibromin I, Glyceraldehyde-3 phosphate dehydrogenase,Protein 1 containing fibronectin domain type III, Eukaryotic initiationfactor 4A-I, L-lactate dehydrogenase chain B, Nuclear heterogeneousRibonucleoprotein A1, 1-like protein 1 polycystic kidney disease, Heatshock protein cognate 71 kDa, Ankyrin-3, Rho 23 GTPase-activatingprotein, Cytoskeletal Keratin 78 type II, Alpha-3 collagen chain (VI),Beta subunit of proteasome type-5, Heterogeneous nuclearribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 or a fragment thereof; or a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence selected from SEQ ID NOs: 1-20 or a fragmentthereof, diagnosing cervical cancer based on the detection of the atleast one polypeptide; and administering a treatment to the subject. Inone aspect, the sample is a blood sample.

In an additional aspect, the at least one polypeptide is Farnesylpyrophosphate synthase or a fragment thereof and at least onepolypeptide selected from neurofibromin I, Glyceraldehyde-3 phosphatedehydrogenase, Protein 1 containing fibronectin domain type III,Eukaryotic initiation factor 4A-I, L-lactate dehydrogenase chain B,Nuclear heterogeneous Ribonucleoprotein A1, 1-like protein 1 polycystickidney disease, Heat shock protein cognate 71 kDa, Ankyrin-3, Rho 23GTPase-activating protein, Cytoskeletal Keratin 78 type II, Alpha-3collagen chain (VI), Beta subunit of proteasome type-5, Heterogeneousnuclear ribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 or a fragment thereof. In a furtherembodiment, the at least one polypeptides is a polypeptide with at leastabout 70% sequence identity to a polypeptide having the amino acidsequence of SEQ ID NO:1 or a fragment thereof and at least onepolypeptide with at least about 70% sequence identity to a polypeptidewith an amino acid sequence selected from SEQ ID NOs:2-20 or a fragmentthereof.

In another aspect, the detecting is by protein microarray, fluorescencedetection, flow cytometry, microfluidic device, lateral flow assay,vertical flow or immunoassay. In a specific aspect, the detecting is bylateral flow assay. In an additional aspect, the treatment is selectedfrom the group consisting of surgery, radiation, chemotherapy, targetedtherapy and immunotherapy.

In a further aspect, the chemotherapy is Cisplatin, Carboplatin,Paclitaxel, Topotecan, docetaxel, ifosfamide, 5-fluorouracil,irinotecan, gemcitabine or mitomycin. In certain aspects, the targetedtherapy is bevacizumab and the immunotherapy is pembrolizumab.

In a further embodiment, the present invention provides methods ofpredicting a response to treatment for a subject having cervical cancerby detecting at least one polypeptide in a sample from a subject;wherein the at least one polypeptide is selected from Farnesylpyrophosphate synthase, neurofibromin I, Glyceraldehyde-3 phosphatedehydrogenase, Protein 1 containing fibronectin domain type III,Eukaryotic initiation factor 4A-I, L-lactate dehydrogenase chain B,Nuclear heterogeneous Ribonucleoprotein A1, 1-like protein 1 polycystickidney disease, heat shock protein cognate 71 kDa, Ankyrin-3, Rho 23GTPase-activating protein, Cytoskeletal Keratin 78 type II, Alpha-3collagen chain (VI), Beta subunit of proteasome type-5, Heterogeneousnuclear ribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 or a fragment thereof, or a polypeptidewith at least about 70% sequence identity to a polypeptide having aminoacid sequence selected from SEQ ID NOs: 1-20 or a fragment thereof; andpredicting a response to treatment based on the detection of the atleast one polypeptide.

In one aspect, the at least one polypeptide is Farnesyl pyrophosphatesynthase or a fragment thereof and at least one polypeptide selectedfrom neurofibromin I, Glyceraldehyde-3 phosphate dehydrogenase, Protein1 containing fibronectin domain type III, Eukaryotic initiation factor4A-I, L-lactate dehydrogenase chain B, Nuclear heterogeneousRibonucleoprotein A1, 1-like protein 1 polycystic kidney disease, Heatshock protein cognate 71 kDa, Ankyrin-3, Rho 23 GTPase-activatingprotein, Cytoskeletal Keratin 78 type II, Alpha-3 collagen chain (VI),Beta subunit of proteasome type-5, Heterogeneous nuclearribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 or a fragment thereof. In another aspect,the at least one polypeptide is a polypeptide with at least about 70%sequence identity to a polypeptide having the amino acid sequence of SEQID NO:1 or a fragment thereof and at least one polypeptide with at leastabout 70% sequence identity to a polypeptide having the amino acidsequence selected from SEQ ID NOs:2-20 or a fragment thereof.

In an additional aspect, the detecting is by protein microarray,fluorescence detection, flow cytometry, microfluidic device, lateralflow assay, vertical flow or immunoassay. In a further aspect, thedetecting is by lateral flow assay. In certain aspects, the treatment issurgery, radiation, chemotherapy, targeted therapy and immunotherapy.

In another embodiment, the present invention provides methods fordetermining the stage of cervical cancer in a subject in need thereof bydetecting at least one polypeptide in a sample from the subject; whereinthe at least one polypeptide is selected from Farnesyl pyrophosphatesynthase, neurofibromin I, Glyceraldehyde-3 phosphate dehydrogenase,Protein 1 containing fibronectin domain type III, Eukaryotic initiationfactor 4A-I, L-lactate dehydrogenase chain B, Nuclear heterogeneousRibonucleoprotein A1, 1-like protein 1 polycystic kidney disease, heatshock protein cognate 71 kDa, Ankyrin-3, Rho 23 GTPase-activatingprotein, Cytoskeletal Keratin 78 type II, Alpha-3 collagen chain (VI),Beta subunit of proteasome type-5, Heterogeneous nuclearribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 or a fragment thereof; or a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence selected from SEQ ID NOs: 1-20 or a fragmentthereof; and determining the stage of cervical cancer in the subjectbased on the detection of the at least one polypeptide.

In one aspect, the at least one polypeptide is Farnesyl pyrophosphatesynthase or a fragment thereof and at least one polypeptide selectedfrom neurofibromin I, Glyceraldehyde-3 phosphate dehydrogenase, Protein1 containing fibronectin domain type III, Eukaryotic initiation factor4A-I, L-lactate dehydrogenase chain B, Nuclear heterogeneousRibonucleoprotein A1, 1-like protein 1 polycystic kidney disease, Heatshock protein cognate 71 kDa, Ankyrin-3, Rho 23 GTPase-activatingprotein, Cytoskeletal Keratin 78 type II, Alpha-3 collagen chain (VI),Beta subunit of proteasome type-5, Heterogeneous nuclearribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 or a fragment thereof. In another aspect,the at least one polypeptide is a polypeptide with at least about 70%sequence identity to a polypeptide having the amino acid sequence of SEQID NO:1 or a fragment thereof and at least one polypeptide with at leastabout 70% sequence identity to a polypeptide having the amino acidsequence selected from SEQ ID NOs:2-20 or a fragment thereof.

In an additional aspect, the detecting is by protein microarray,fluorescence detection, flow cytometry, microfluidic device, lateralflow assay, vertical assay or immunoassay. In a specific aspect, thedetecting is by lateral flow assay. In a further aspect, the method alsoincludes administering a treatment to the subject. In certain aspects,the treatment is surgery, radiation, chemotherapy, targeted therapy orimmunotherapy. In one aspect, the cervical cancer is stage I, stage II,stage III or stage IV.

In one embodiment, the present invention provides a kit with a samplecollection unit; a lateral flow device; and instructions for using thelateral flow device.

In one aspect, the lateral flow device detects at least one polypeptideselected from Farnesyl pyrophosphate synthase, neurofibromin I,Glyceraldehyde-3 phosphate dehydrogenase, Protein 1 containingfibronectin domain type III, Eukaryotic initiation factor 4A-I,L-lactate dehydrogenase chain B, Nuclear heterogeneous RibonucleoproteinA1, 1-like protein 1 polycystic kidney disease, heat shock proteincognate 71 kDa, Ankyrin-3, Rho 23 GTPase-activating protein,Cytoskeletal Keratin 78 type II, Alpha-3 collagen chain (VI), Betasubunit of proteasome type-5, Heterogeneous nuclear ribonucleoproteinsA2/B1, Histone H2B type 1-B, homolog of DnaJ subfamily C member 13, Betaenolase, Glutathione S-transferase P, Glutathione S-transferase Mu 3 ora fragment thereof; or a polypeptide with at least about 70% sequenceidentity to a polypeptide having the amino acid sequence selected fromSEQ ID NOs: 1-20 or a fragment thereof.

In an additional aspect, the at least one polypeptide is Farnesylpyrophosphate synthase or a fragment thereof and at least onepolypeptide selected from neurofibromin I, Glyceraldehyde-3 phosphatedehydrogenase, Protein 1 containing fibronectin domain type III,Eukaryotic initiation factor 4A-I, L-lactate dehydrogenase chain B,Nuclear heterogeneous Ribonucleoprotein A1, 1-like protein 1 polycystickidney disease, heat shock protein cognate 71 kDa, Ankyrin-3, Rho 23GTPase-activating protein, Cytoskeletal Keratin 78 type II, Alph-3collagen chain (VI), Beta subunit of proteasome type-5, Heterogeneousnuclear ribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 or a fragment thereof. In a furtheraspect, the at least one polypeptide is a polypeptide with at leastabout 70% sequence identity to a polypeptide having the amino acidsequence of SEQ ID NO:1 or a fragment thereof and at least onepolypeptide with at least about 70% sequence identity to a polypeptidehaving the amino acid sequence selected from SEQ ID NOs:2-20 or afragment thereof.

In another aspect, the lateral flow device detects the at least onepolypeptide by an immunoassay. In one aspect, the sample collection unitcollects a blood sample.

In an additional aspect, the present invention provides a use of thedetection of at least one polypeptide for the diagnosis of cervicalcancer in a subject in need thereof, wherein the at least onepolypeptide is selected from Farnesyl pyrophosphate synthase,neurofibromin I, Glyceraldehyde-3 phosphate dehydrogenase, Protein 1containing fibronectin domain type III, Eukaryotic initiation factor4A-I, L-lactate dehydrogenase chain B, Nuclear heterogeneousRibonucleoprotein A1, 1-like protein 1 polycystic kidney disease, heatshock protein cognate 71 kDa, Ankyrin-3, Rho 23 GTPase-activatingprotein, Cytoskeletal Keratin 78 type II, Alpha-3 collagen chain (VI),Beta subunit of proteasome type-5, Heterogeneous nuclearribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 or a fragment thereof, or a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence selected from SEQ ID NOs: 1-20 or a fragmentthereof.

In a further aspect, the at least one polypeptide is detected in asample from the subject and the sample is a blood sample. In anotheraspect, the at least one polypeptide is Farnesyl pyrophosphate synthaseor a fragment thereof and at least one polypeptide selected fromneurofibromin I, Glyceraldehyde-3 phosphate dehydrogenase, Protein 1containing fibronectin domain type III, Eukaryotic initiation factor4A-I, L-lactate dehydrogenase chain B, Nuclear heterogeneousRibonucleoprotein A1, 1-like protein 1 polycystic kidney disease, heatshock protein cognate 71 kDa, Ankyrin-3, Rho 23 GTPase-activatingprotein, Cytoskeletal Keratin 78 type II, Alph-3 collagen chain (VI),Beta subunit of proteasome type-5, Heterogeneous nuclearribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 or a fragment thereof. In one aspect, theat least one polypeptide is a polypeptide with at least about 70%sequence identity to a polypeptide having the amino acid sequence of SEQID NO:1 or a fragment thereof and at least one polypeptide with at leastabout 70% sequence identity to a polypeptide having the amino acidsequence selected from SEQ ID NOs:2-20 or a fragment thereof.

In another aspect, the detecting is by protein microarray, fluorescencedetection, flow cytometry, microfluidic device, lateral flow assay,vertical flow or immunoassay. In certain aspects, the detecting is bylateral flow assay.

BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1 shows the workflows to obtain secreted proteins in vivo or exvivo.

FIG. 2 is a graph showing the growth kinetics of cell lines with andwithout fetal bovine serum (FBS).

FIG. 3A show analysis of the cervical cancer line secretome and itsnegative control.

FIG. 3B illustrates the number of total protein in each cell line, thenumber of unique protein, and the protein shared between cell lines.FIG. 3C is a graphical representation of the data presented in FIG. 3B.

FIG. 4A shows a dotplot graph illustrating the label-free quantification(LFQ) of 200 CC cell line secretome proteins vs. their negative control.FIG. 4B is a graph bar representing the expression profile of proteinsof interest. FIG. 4C is a heat map illustrating the label-freequantification (LFQ) of 200 CC cell line secretome proteins vs. theirnegative control.

FIG. 5A illustrates the workflow to collect blood and serum samples.FIG. 5B illustrate the western blot analysis of FPS (farnesylpyrophosphatase) in mouse sera. FIG. 5C illustrates the quantificationof the data presented in FIG. 5B.

FIG. 6A illustrates the validation of the candidate protein Farnesylpyrophosphate synthase in the sera of patients with CC. FIG. 6Billustrates the level of Farnesyl pyrophosphate synthase proteindetected in the sera of control patients. FIG. 6C illustrates thequantification of the data presented in FIGS. 6A and 6B.

FIG. 7A illustrates the validation of the candidate protein Farnesylpyrophosphate synthase in precancerous cervical lesions. FIG. 7Billustrates the validation of the candidate protein Ankyrin-3 inprecancerous cervical lesions. FIG. 7C illustrates the quantification ofthe data presented in FIGS. 7A and 7B.

FIG. 8A illustrates the detection of Farnesyl pyrophosphate synthase bywestern blot in the sera of patients with pre-cancerous lesions L1. FIG.8B illustrates the detection of Farnesyl pyrophosphate synthase bywestern blot in the sera of patients with pre-cancerous lesions L2. FIG.8C illustrates the detection of Farnesyl pyrophosphate synthase bywestern blot in the sera of control patients. FIG. 8D illustrates thequantification of the data provided in FIG. 8A-8C.

FIG. 9A illustrates the detection of Ankyrin-3 by western blot in thesera of patients with pre-cancerous lesions L. FIG. 9B illustrates thedetection of Ankyrin-3 by western blot in the sera of patients withpre-cancerous lesions L2. FIG. 9C illustrates the detection of Ankyrin-3by western blot in the sera of control patients. FIG. 9D illustrates thequantification of the data provided in FIG. 9A-9C.

DETAILED DESCRIPTION OF THE INVENTION

The present invention is based on the seminal discovery that acollection of biomarkers can be used for the diagnosis of cervicalcancer.

Before the present compositions and methods are described, it is to beunderstood that this invention is not limited to particularcompositions, methods, and experimental conditions described, as suchcompositions, methods, and conditions may vary. It is also to beunderstood that the terminology used herein is for purposes ofdescribing particular embodiments only, and is not intended to belimiting, since the scope of the present invention will be limited onlyin the appended claims.

As used in this specification and the appended claims, the singularforms “a”, “an”, and “the” include plural references unless the contextclearly dictates otherwise. Thus, for example, references to “themethod” includes one or more methods, and/or steps of the type describedherein which will become apparent to those persons skilled in the artupon reading this disclosure and so forth.

All publications, patents, and patent applications mentioned in thisspecification are herein incorporated by reference to the same extent asif each individual publication, patent, or patent application wasspecifically and individually indicated to be incorporated by reference.

Unless defined otherwise, all technical and scientific terms used hereinhave the same meaning as commonly understood by one of ordinary skill inthe art to which this invention belongs. Although any methods andmaterials similar or equivalent to those described herein can be used inthe practice or testing of the invention, it will be understood thatmodifications and variations are encompassed within the spirit and scopeof the instant disclosure. The preferred methods and materials are nowdescribed.

Cervical cancer (CC) is one of the most common cancers among womenworldwide. Among the risk factors related to this disease are infectionwith the human papilloma virus (HPV), the microbiome, risky sexualbehavior, multiparity, smoking, prolonged use of hormonal contraceptivesand environmental factors. Cervical cancer is a disease of slow andprogressive evolution. It is preceded by cervical intraepithelialneoplasms, which are the lesions considered to be the prelude to thiscondition.

These lesions are generally asymptomatic, making it difficult to detectthe disease in a timely manner, so if they are not detected by any ofthe conventional methods, there is a risk that they will develop to thestate of CC. Due to this, the diagnosis of neoplastic lesions or cancerin early stages, from HPV infection, is extremely important to be ableto channel and treat these cases in a timely and adequate manner.

Currently the gold standard for the diagnosis of CC is the Pap test,while for the detection of HPV the most widely used method is detectionby PCR and sequencing of the viral genome. Although both methods are aninternational benchmark, these tests have technical limitations, sincehighly trained personnel, facilities and specialized equipment arerequired; Furthermore, it is not easily accessible to the entire femalepopulation and the existence of socio-cultural beliefs prevent womenfrom making diagnoses.

Molecular biomarkers would help in the detection of cervical cancerusing non-invasive methods. These biomarkers will serve as detection,prognosis, or follow-up of treatment of preneoplastic lesions andcancers in early stages based on patient serum samples. Thus being ableto decrease the incidence of the disease that continues to be a publichealth problem in many low and high income countries.

Due to all of the above, there is an urgent need to develop new andsimpler disease detection methods that are applicable in earlydetection, specific, highly sensitive, inexpensive, and easilyaccessible to the population.

The methods, compositions, and kits disclosed herein may be used for thediagnosis, prognosis, and/or monitoring the status or outcome of acancer in a subject. In some embodiments, the diagnosing, predicting,and/or monitoring the status or outcome of a cancer comprisesdetermining the malignancy or malignant potential of the cancer ortumor. Alternatively, the diagnosing, predicting, and/or monitoring thestatus or outcome of a cancer comprises determining the stage of thecancer. The diagnosing, predicting, and/or monitoring the status oroutcome of a cancer can comprise determining the tumor grade.Alternatively, the diagnosing, predicting, and/or monitoring the statusor outcome of a cancer comprises assessing the risk of developing acancer. In some embodiments, the diagnosing, predicting, and/ormonitoring the status or outcome of a cancer includes assessing the riskof cancer recurrence. In some embodiments, diagnosing, predicting,and/or monitoring the status or outcome of a cancer may comprisedetermining the efficacy of treatment.

In one embodiment, the present invention is directed to methods ofdetecting at least one polypeptide in a sample from a subject; whereinthe at least one polypeptide is selected from Farnesyl pyrophosphatesynthase, neurofibromin I, Glyceraldehyde-3 phosphate dehydrogenase,Protein 1 containing fibronectin domain type III, Eukaryotic initiationfactor 4A-I, L-lactate dehydrogenase chain B, Nuclear heterogeneousRibonucleoprotein A1, 1-like protein 1 polycystic kidney disease, HeatShock Protein Cognate 71 kDa, Ankyrin-3, Rho 23 GTPase-activatingprotein, Cytoskeletal Keratin 78 type II, Alpha-3 collagen chain (VI),Beta subunit of proteasome type-5, Heterogeneous nuclearribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 or a fragment thereof; or a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence selected from SEQ ID NOs: 1-147 or a fragmentthereof; and diagnosing cervical cancer based on the detection of the atleast one polypeptide. In one aspect, the at least one polypeptide is apolypeptide with at least about 70% sequence identity to a polypeptidehaving the amino acid sequence selected from SEQ ID NOs:1-20 or afragment thereof.

As used herein, the terms “detect”, “detecting” or “detection” maydescribe either the general act of discovering or discerning or thespecific observation of a polypeptide. Detecting may comprisedetermining the presence or absence of a polypeptide. Detecting maycomprise quantifying a polypeptide. For example, detecting comprisesdetermining the expression level of a polypeptide. For example, thepolypeptide may comprise at least a portion of the polypeptidesdisclosed herein.

The polypeptides or biomarkers of the present invention can be detectedby any method that can be used for the specific detection and/oridentification of a protein, peptide, fragment thereof, variant thereof,or mutant thereof. Examples of method of detecting protein include, butare not limited to: spectrometry methods, such as high-performanceliquid chromatography (HPLC), partition chromatography, normal-phasechromatography, displacement chromatography, reversed-phasechromatography (RPC), size-exclusion chromatography, ion-exchangechromatography, bioaffinity chromatography, aqueous normal-phasechromatography, liquid chromatography-mass spectrometry (LC/MS); andantibody dependent or immunoassay based methods, such as enzyme-linkedimmunosorbent assay (ELISA), direct ELISA, sandwich ELISA, competitiveELISA, reverse ELISA, protein immunoprecipitation (direct or indirect),individual protein immunoprecipitation (P), protein compleximmunoprecipitation (Co-IP), chromatin immunoprecipitation (ChIP), RNPImmunoprecipitation (RIP), immunoelectrophoresis, western blot, andprotein immunostaining. The polypeptides or biomarkers of the presentinvention can also be detected using protein microarrays, lateral flowassays or vertical flow assays. In certain aspects, the polypeptides orbiomarkers are detected using a lateral flow assay. A lateral flow assayis typically an immunoassay either a sandwich assay or competitiveassay. Typically these assays use a conjugated gold, carbon or coloredlatex nanoparticles. Multiplexed assays may also be performed usingthese methods.

As used herein, the term “subject” refers to any organisms that arescreened using the diagnostic methods and treated using the treatmentmethods described herein. Such organisms preferably include, but are notlimited to, mammals (e.g., murines, simians, equines, bovines, porcines,canines, felines, and the like), and most preferably includes humans.

The term “diagnosed,” as used herein, refers to the recognition of adisease by its signs and symptoms, or genetic analysis, pathologicalanalysis, histological analysis, and the like. Specifically, the termrefers to the diagnosis or detection of cervical cancer.

The biomarkers of the present invention serve various functions withincells.

Farnesylpyrophosphate synthase (FPPS), also known asDimethylallyltranstransferase (DMATT) or as farnesyldiphosphate synthase(FDPS), is an enzyme that in humans is encoded by the FDPS gene andcatalyzes the transformation of dimethylallylpyrophosphate (DMAPP) andisopentenyl pyrophosphate (IPP) into farnesylpyrophosphate (FPP).

Neurofibromin 1 (NF1) is a gene in humans that is located on chromosome17. NF1 codes for neurofibromin, a GTPase-activating protein thatnegatively regulates RAS/MAPK pathway activity by accelerating thehydrolysis of Ras-bound GTP. NF1 has a high mutation rate and mutationsin NF1 can alter cellular growth control, and neural development,resulting in neurofibromatosis type 1 (NF1, also known as vonRecklinghausen syndrome).

Glyceraldehyde 3-phosphate dehydrogenase (abbreviated as GAPDH or lesscommonly as G3PDH) (EC 1.2.1.12) is an enzyme of −37 kDa that catalyzesthe sixth step of glycolysis and thus serves to break down glucose forenergy and carbon molecules. In addition to this long establishedmetabolic function, GAPDH has recently been implicated in severalnon-metabolic processes, including transcription activation, initiationof apoptosis, ER to Golgi vesicle shuttling, and fast axonal, oraxoplasmic transport.

Protein 1 containing fibronectin domain type III also known asFibronectin type III domain containing protein-1 may be an activator ofG protein signaling. Protein 1 containing fibronectin domain type III isencoded by the FNDC1 gene.

Eukaryotic initiation factor 4A-I is an ATP-dependent RNA helicase whichis a subunit of the eIF4F complex involved in cap recognition and isrequired for mRNA binding to ribosome. In the current model oftranslation initiation, eIF4A unwinds RNA secondary structures in the5′-UTR of mRNAs which is necessary to allow efficient binding of thesmall ribosomal subunit, and subsequent scanning for the initiatorcodon. The protein is encoded by the EIF4A1 gene.

L-lactate dehydrogenase chain B is involved in step 1 of the subpathwaythat synthesizes (S)-lactate from pyruvate. The protein is encoded bythe LDHB gene.

Nuclear heterogeneous Ribonucleoprotein A1, also known as heterogeneousnuclear ribonucleoprotein A1, is involved in the packaging of pre-mRNAinto hnRNP particles, transport of poly(A) mRNA from the nucleus to thecytoplasm and may modulate splice site selection. May bind to specificmiRNA hairpins. Binds to the IRES and thereby inhibits the translationof the apoptosis protease activating factor APAF1. Nuclear heterogeneousRibonucleoprotein A1 is encoded by the HNRNPA1 gene.

1-like protein 1 polycystic kidney disease, also known as polycystickidney disease protein 1-like 1, is a component of a ciliary calciumchannel that controls calcium concentration within primary cilia withoutaffecting cytoplasmic calcium concentration. Forms a heterodimer withPKD2L1 in primary cilia and forms a calcium-permeant ciliary channelthat regulates sonic hedgehog/SHH signaling and GLI2 transcription. Doesnot constitute the pore-forming subunit. Also involved in left/rightaxis specification downstream of nodal flow: forms a complex with PKD2in cilia to facilitate flow detection in left/right patterning. Encodedby the PKD1L1 gene.

Heat Shock Protein Cognate 71 kDa is a molecular chaperone implicated ina wide variety of cellular processes, including protection of theproteome from stress, folding and transport of newly synthesizedpolypeptides, activation of proteolysis of misfolded proteins and theformation and dissociation of protein complexes. Plays a pivotal role inthe protein quality control system, ensuring the correct folding ofproteins, the re-folding of misfolded proteins and controlling thetargeting of proteins for subsequent degradation. This is achievedthrough cycles of ATP binding, ATP hydrolysis and ADP release, mediatedby co-chaperones. The co-chaperones have been shown to not only regulatedifferent steps of the ATPase cycle of HSP70, but they also have anindividual specificity such that one co-chaperone may promote folding ofa substrate while another may promote degradation. The affinity of HSP70for polypeptides is regulated by its nucleotide bound state. In theATP-bound form, it has a low affinity for substrate proteins. However,upon hydrolysis of the ATP to ADP, it undergoes a conformational changethat increases its affinity for substrate proteins. HSP70 goes throughrepeated cycles of ATP hydrolysis and nucleotide exchange, which permitscycles of substrate binding and release. The HSP70-associatedco-chaperones are of three types: J-domain co-chaperones HSP40s(stimulate ATPase hydrolysis by HSP70), the nucleotide exchange factors(NEF) such as BAG1/2/3 (facilitate conversion of HSP70 from theADP-bound to the ATP-bound state thereby promoting substrate release),and the TPR domain chaperones such as HOPX and STUB1. Acts as arepressor of transcriptional activation. Inhibits the transcriptionalcoactivator activity of CITED1 on Smad-mediated transcription. Componentof the PRP19-CDC5L complex that forms an integral part of thespliceosome and is required for activating pre-mRNA splicing. May have ascaffolding role in the spliceosome assembly as it contacts all othercomponents of the core complex. Binds bacterial lipopolysaccharide (LPS)and mediates LPS-induced inflammatory response, including TNF secretionby monocytes. Participates in the ER-associated degradation (ERAD)quality control pathway in conjunction with J domain-containingco-chaperones and the E3 ligase STUB1. Interacts with VGF-derivedpeptide TLQP-21. This protein is encoded by the HSPA8 gene.

Ankyrin 3 is found in skeletal muscle and is required for costamerelocalization of DMD and betaDAG1 (By similarity). Membrane-cytoskeletonlinker. The protein may participate in the maintenance/targeting of ionchannels and cell adhesion molecules at the nodes of Ranvier and axonalinitial segments. Regulates KCNA1 channel activity in function ofdietary Mg levels, and thereby contributes to the regulation of renal Mgreabsorption. Ankyrin-3 is encoded by the ANK3 gene.

Rho 23 GTPase-activating protein, also known as Rho GTPase activatingprotein 23, is part of the RHO family of small GTPases which areinvolved in signal transduction through transmembrane receptors, andthey are inactive in the GDP-bound form and active in the GTP-boundform. GTPase-activating proteins, such as ARHGAP23, inactivate RHOfamily proteins by stimulating their hydrolysis of GTP. RhoGTPase-activating protein 23 is encoded by the ARHGAP23 gene.

Keratins are the major structural proteins in epithelial cells, forminga cytoplasmic network of 10 to 12 nm wide intermediate filaments andcreating a scaffold that gives cells the ability to withstand mechanicaland non-mechanical stresses. There are two types of cytoskeletal andmicrofibrillar keratin, I (acidic) and II (neutral to basic), i.e.Cytoskeletal Keratin 78 type II, also known as keratin, type IIcytoskeletal 78. Cytoskeletal keratin 78 type II is encoded by the KRT78gene.

Alpha 3 collagen chain (VI), also known as collagen alpha-3 (VI) chain,acts as a cell-binding protein. Collagen alpha-3 (VI) chain is encodedby the COL6A3 gene.

Beta subunit of proteasome type-5, also known as Proteasome subunit betatype-5 and 20S proteasome subunit beta-5 is a protein that in humans isencoded by the PSMB5 gene. This protein is one of the 17 essentialsubunits (alpha subunits 1-7, constitutive beta subunits 1-7, andinducible subunits including beta1i, beta2i, beta5i) that contributes tothe complete assembly of 20S proteasome complex. In particular,proteasome subunit beta type-5, along with other beta subunits, assembleinto two heptameric rings and subsequently a proteolytic chamber forsubstrate degradation. This protein contains “chymotrypsin-like”activity and is capable of cleaving after large hydrophobic residues ofpeptide. The eukaryotic proteasome recognized degradable proteins,including damaged proteins for protein quality control purpose or keyregulatory protein components for dynamic biological processes. Anessential function of a modified proteasome, the immunoproteasome, isthe processing of class I MHC peptides. Beta subunit of proteasometype-5 is encoded by the PSMB5 gene.

Heterogeneous nuclear ribonucleoprotein (hnRNP) that associates withnascent pre-mRNAs, packaging them into hnRNP particles. The hnRNPparticle arrangement on nascent hnRNA is non-random andsequence-dependent and serves to condense and stabilize the transcriptsand minimize tangling and knotting. Packaging plays a role in variousprocesses such as transcription, pre-mRNA processing, RNA nuclearexport, subcellular location, mRNA translation and stability of maturemRNAs. Forms hnRNP particles with at least 20 other different hnRNP andheterogeneous nuclear RNA in the nucleus. Involved in transport ofspecific mRNAs to the cytoplasm in oligodendrocytes and neurons: acts byspecifically recognizing and binding the A2RE (21 nucleotide hnRNP A2response element) or the A2RE11 (derivative 11 nucleotideoligonucleotide) sequence motifs present on some mRNAs, and promotestheir transport to the cytoplasm. Specifically binds single-strandedtelomeric DNA sequences, protecting telomeric DNA repeat againstendonuclease digestion (By similarity). Also binds other RNA molecules,such as primary miRNA (pri-miRNAs): acts as a nuclear ‘reader’ of theN6-methyladenosine (m6A) mark by specifically recognizing and binding asubset of nuclear m6A-containing pri-miRNAs. Binding to m6A-containingpri-miRNAs promotes pri-miRNA processing by enhancing binding of DGCR8to pri-miRNA transcripts. Involved in miRNA sorting into exosomesfollowing sumoylation, possibly by binding (m6A)-containing pre-miRNAs.Acts as a regulator of efficiency of mRNA splicing, possibly by bindingto m6A-containing pre-mRNAs. Plays also a role in the activation of theinnate immune response. Mechanistically, senses the presence of viralDNA in the nucleus, homodimerizes and is demethylated by JMJD6. In turn,translocates to the cytoplasm where it activates the TBK1-IRF3 pathway,leading to interferon alpha/beta production. Heterogeneous nuclearribonucleoproteins A2/B1 is a protein that in humans is encoded by theHNRNPA2B1 gene.

Histone H2B type 1-B is a core component of nucleosome. Nucleosomes wrapand compact DNA into chromatin, limiting DNA accessibility to thecellular machineries which require DNA as a template. Histones therebyplay a central role in transcription regulation, DNA repair, DNAreplication and chromosomal stability. DNA accessibility is regulatedvia a complex set of post-translational modifications of histones, alsocalled histone code, and nucleosome remodeling. Histone H2B type 1-B isencoded by the H2BC3 gene.

Homolog of DnaJ subfamily C member 13, also known as DnaJ homologsubfamily C member 13, is involved in membrane trafficking through earlyendosomes, such as the early endosome to recycling endosome transportimplicated in the recycling of transferrin and the early endosome tolate endosome transport implicated in degradation of EGF and EGFR.Involved in the regulation of endosomal membrane tubulation andregulates the dynamics of SNX1 on the endosomal membrane; viaassociation with WASHC2 may link the WASH complex to the retromerSNX-BAR subcomplex. DnaJ homolog subfamily member 13 is encoded by theDNAJC13 gene.

Enolase 3 (ENO3), more commonly known as beta-enolase (ENO-β), is anenzyme that in humans is encoded by the ENO3 gene. This gene encodes oneof the three enolase isoenzymes found in mammals. This isoenzyme isfound in skeletal muscle cells in the adult where it may play a role inmuscle development and regeneration. A switch from alpha enolase to betaenolase occurs in muscle tissue during development in rodents. Mutationsin this gene have been associated with glycogen storage disease.Alternatively spliced transcript variants encoding different isoformshave been described.

Glutathione S-transferases (GSTs) are a family of enzymes that play animportant role in detoxification by catalyzing the conjugation of manyhydrophobic and electrophilic compounds with reduced glutathione. Basedon their biochemical, immunologic, and structural properties, thesoluble GSTs are categorized into four main classes: alpha, mu, pi, andtheta. The glutathione S-transferase pi gene (GSTP1) is a polymorphicgene encoding active, functionally different GSTP1 variant proteins thatare thought to function in xenobiotic metabolism and play a role insusceptibility to cancer, and other diseases. Glutathione S-transferaseP is an enzyme that in humans is encoded by the GSTP1 gene.

Glutathione S-transferase Mu 3 may govern uptake and detoxification ofboth endogenous compounds and xenobiotics at the testis and brain bloodbarriers. Glutathione S-transferase Mu 3 is encoded by the GSTM3 gene.

The amino acid sequences for the biomarkers of the present invention andvariants thereof are shown in Table 1.

TABLE 1 Protein name/SEQ ID NO. Amino acid sequenceFarnesyl pyrophosphate synthaseMPLSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVLAW (FDPS)HSARCWCQAWTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFS SEQ ID NO: 1QIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAV FLGLARKIYKRRKNeurofibromin 1 MAAHRPVEWVQAVVSRFDEQLPIKTGQQNTHTKVSTEHNKECLIN (NF1)ISKYKFSLVISGLTTILKNVNNMRIFGEAAEKNLYLSQLIILDTLEKC SEQ ID NO: 2LAGQPKDTMRLDETMLVKQLLPEICHFLHTCREGNQHAAELRNSASGVLFSLSCNNFNAVFSRISTRLQELTVCSEDNVDVHDIELLQYINVDCAKLKRLLKETAFKFKALKKVAQLAVINSLEKAFWNWVENYPDEFTKLYQIPQTDMAECAEKLFDLVDGFAESTKRKAAVWPLQIILLILCPEIIQDISKDVVDENNMNKKLFLDSLRKALAGHGGSRQLTESAAIACVKLCKASTYINWEDNSVIFLLVQSMVVDLKNLLFNPSKPFSRGSQPADVDLMIDCLVSCFRISPHNNQHFKICLAQNSPSTFHYVLVNSLHRIITNSALDWWPKIDAVYCHSVELRNMFGETLHKAVQGCGAHPAIRMAPSLTFKEKVTSLKFKEKPTDLETRSYKYLLLSMVKLIHADPKLLLCNPRKQGPETQGSTAELITGLVQLVPQSHMPEIAQEAMEALLVLHQLDSIDLWNPDAPVETFWEISSQMLFYICKKLTSHQMLSSTEILKWLREILICRNKFLLKNKQADRSSCHFLLFYGVGCDIPSSGNTSQMSMDHEELLRTPGASLRKGKGNSSMDSAAGCSGTPPICRQAQTKLEVALYMFLWNPDTEAVLVAMSCFRHLCEEADIRCGVDEVSVHNLLPNYNTFMEFASVSNMMSTGRAALQKRVMALLRRIEHPTAGNTEAWEDTHAKWEQATKLILNYPKAKMEDGQAAESLHKTIVKRRMSHVSGGGSIDLSDTDSLQEWINMTGFLCALGGVCLQQRSNSGLATYSPPMGPVSERKGSMISVMSSEGNADTPVSKFMDRLLSLMVCNHEKVGLQIRTNVKDLVGLELSPALYPMLFNKLKNTISKFFDSQGQVLLTDTNTQFVEQTIAIMKNLLDNHTEGSSEHLGQASIETMMLNLVRYVRVLGNMVHAIQIKTKLCQLVEVMMARRDDLSFCQEMKFRNKMVEYLTDWVMGTSNQAADDDVKCLTRDLDQASMEAVVSLLAGLPLQPEEGDGVELMEAKSQLFLKYFTLFMNLLNDCSEVEDESAQTGGRKRGMSRRLASLRHCTVLAMSNLLNANVDSGLMHSIGLGYHKDLQTRATFMEVLTKILQQGTEFDTLAETVLADRFERLVELVTMMGDQGELPIAMALANVVPCSQWDELARVLVTLFDSRHLLYQLLWNMFSKEVELADSMQTLFRGNSLASKIMTFCFKVYGATYLQKLLDPLLRIVITSSDWQHVSFEVDPTRLEPSESLEENQRNLLQMTEKFFHAIISSSSEFPPQLRSVCHCLYQATCHSLLNKATVKEKKENKKSVVSQRFPQNSIGAVGSAMFLRFINPAIVSPYEAGILDKKPPPRIERGLKLMSKILQSIANHVLFTKEEHMRPFNDFVKSNFDAARRFFLDIASDCPTSDAVNHSLSFISDGNVLALHRLLWNNQEKIGQYLSSNRDHKAVGRRPFDKMATLLAYLGPPEHKPVADTHWSSLNLTSSKFEEFMTRHQVHEKEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYEIVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCPGKLAEHIEHEQQKLPAATLALEEDLKVFHNALKLAHKDTKVSIKVGSTAVQVTSAERTKVLGQSVFLNDIYYASEIEEICLVDENQFTLTIANQGTPLTFMHQECEAIVQSIIHIRTRWELSQPDSIPQHTKIRPKDVPGTLLNIALLNLGSSDPSLRSAAYNLLCALTCTFNLKIEGQLLETSGLCIPANNTLFIVSISKTLAANEPHLTLEFLEECISGFSKSSIELKHLCLEYMTPWLSNLVRFCKHNDDAKRQRVTAILDKLITMTINEKQMYPSIQAKIWGSLGQITDLLDVVLDSFIKTSATGGLGSIKAEVMADTAVALASGNVKLVSSKVIGRMCKIIDKTCLSPTPTLEQHLMWDDIAILARYMLMLSFNNSLDVAAHLPYLFHVVTFLVATGPLSLRASTHGLVINIIHSLCTCSQLHFSEETKQVLRLSLTEFSLPKFYLLFGISKVKSAAVIAFRSSYRDRSFSPGSYERETFALTSLETVTEALLEIMEACMRDIPTCKWLDQWTELAQRFAFQYNPSLQPRALVVFGCISKRVSHGQIKQIIRILSKALESCLKGPDTYNSQVLIEATVIALTKLQPLLNKDSPLHKALFWVAVAVLQLDEVNLYSAGTALLEQNLHTLDSLRIFNDKSPEEVFMAIRNPLEWHCKQMDHFVGLNFNSNFNFALVGHLLKGYRHPSPAIVARTVRILHTLLTLVNKHRNCDKFEVNTQSVAYLAALLTVSEEVRSRCSLKHRKSLLLTDISMENVPMDTYPIHHGDPSYRTLKETQPWSSPKGSEGYLAATYPTVGQTSPRARKSMSLDMGQPSQANTKKLLGTRKSFDHLISDTKAPKRQEMESGITTPPKMRRVAETDYEMETQRISSSQQHPHLRKVSVSESNVLLDEEVLTDPKIQALLLTVLATLVKYTTDEFDQRILYEYLAEASVVFPKVFPVVHNLLDSKINTLLSLCQDPNLLNPIHGIVQSVVYHEESPPQYQTSYLQSFGFNGLWRFAGPFSKQTQIPDYAELIVKFLDALIDTYLPGIDEETSEESLLTPTSPYPPALQSQLSITANLNLSNSMTSLATSQHSPGIDKENVELSPTTGHCNSGRTRHGSASQVQKQRSAGSFKRNSIK KIVGlyceraldehyde-3 phosphate MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYdehydrogenase MFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPSKIKWGDA (GAPDH)GAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMG SEQ ID NO: 3VNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYIEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDN EFGYSNRVVDLMAHMASKEProtein 1 containing fibronectinMAPEAGATLRAPRRLSWAALLLLAALLPVASSAAASVDHPLKPRH domain type IIIVKLLSTKMGLKVTWDPPKDATSRPVEHYNIAYGKSLKSLKYIKVNor Fibronectin Type III DomainAETYSFLIEDVEPGVVYFVLLTAENHSGVSRPVYRAESPPGGEWIEI Containing protein 1DGFPIKGPGPFNETVTEKEVPNKPLRVRVRSSDDRLSVAWKAPRLS (FNDC1)GAKSPRRSRGFLLGYGESGRKMNYVPLTRDERTHEIKKLASESVY SEQ ID NO: 4VVSLQSMNSQGRSQPVYRAALTKRKISEEDELDVPDDISVRVMSSQSVLVSWVDPVLEKQKKVVASRQYTVRYREKGELARWDYKQIANRRVLIENLIPDTVYEFAVRISQGERDGKWSTSVFQRTPESAPTTAPENLNVWPVNGKPTVVAASWDALPETEGKVKEYILSYAPALKPFGAKSLTYPGDTTSALVDGLQPGERYLFKIRATNRRGLGPHSKAFIVAMPTTSKADVEQNTEDNGKPEKPEPSSPSPRAPASSQHPSVPASPQGRNAKDLLLDLKNKILANGGAPRKPQLRAKKAEELDLQSTEITGEEELGSREDSPMSPSDTQDQKRTLRPPSRHGHSVVAPGRTAVRARMPALPRREGVDKPGFSLATQPRPGAPPSASASPAHHASTQGTSHRPSLPASLNDNDLVDSDEDERAVGSLHPKGAFAQPRPALSPSRQSPSSVLRDRSSVHPGAKPASPARRTPHSGAAEEDSSASAPPSRLSPPHGGSSRLLPTQPHLSSPLSKGGKDGEDAPATNSNAPSRSTMSSSVSSHLSSRTQVSEGAEASDGESHGDGDREDGGRQAEATAQTLRARPASGHFHLLRHKPFAANGRSPSRFSIGRGPRLQPSSSPQSTVPSRAHPRVPSHSDSHPKLSSGIHGDEEDEKPLPATVVNDHVPSSSRQPISRGWEDLRRSPQRGASLHRKEPIPENPKSTGADTHPQGKYSSLASKAQDVQQSTDADIEGHSPKAQPGSTDRHASPARPPAARSQQHPSVPRRMTPGRAPQQQPPPPVATSQHHPGPQSRDAGRSPSQPRLSLTQAGRPRPTSQGRSHSSSDPYTASSRGMLPTALQNQDEDAQGSYDDDSTEVEAQDVRAPAHAARAKEAAASLPKHQQVESPTGAGAGGDHRSQRGHAASPARPSRPGGPQSRARVPSRAAPGKSEPPSKRPLSSKSQQSVSAEDDEEEDAGFFKGGKEDLLSSSVPKWPSSSTPRGGKDADGSLAKEEREPAIALAPRGGSLAPVKRPLPPPPGSSPRASHVPSRLPPRSAATVSPVAGTHPWPQYTTRAPPGHFSTTPMLSLRQRMMHARFRNPLSRQPARPSYRQGYNGRPNVEGKVLPGSNGKPNGQRIINGPQGTKWVVDLDRGLVLNAEGRYLQDSHGNPLRIKLGGDGRTIVDLEGTPVVSPDGLPLFGQGRHGTPLANAQDKPILSLGGKPLVGLEVIKKTTHPPTTTMQPTTTTTPLPTTTTPRPTTATTRRTTTTRRTTTRRPTTTVRTTTRTTTTTTPTPTTPIPTCPPGTLERHDDDGNLIMSSNGIPECYAEEDEFSGLETDTAVPTEEAYVIYDEDYEFETSRPPTTTEPSTTATTPRVIPEEGAISSFPEEEFDLAGRKRFVAPYVTYLNKDPSAPCSLTDALDHFQVDSLDEIIPNDLKKSDLPPQHAPRNITVVAVEGCHSFVIVDWDKATPGDVVTGYLVYSASYEDFIRNKWSTQASSVTHLPIENLKPNTRYYFKVQAQNPHGYGPISPSVSFVTESDNPLLVVRPPGGEPIWIPFAFKHDPSYTDCHGRQYVKRTWYRKFVGVVLCNSLRYKIYLSDNLKDTFYSIGDSWGRGEDHCQFVDSHLDGRTGPQSYVEALPTIQGYYRQYRQEPVRFGNIGFGT PYYYVGWYECGVSIPGKWEukaryotic initiation factor 4A-IMSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLR (EIF4A1)GIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ SEQ ID NO: 5IELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI L-lactate dehydrogenase chain BMATLKEKLIAPVAEEEATVPNNKITVVGVGQVGMACAISILGKSLA (LDHB)DELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANS SEQ ID NO: 6KIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLK KSADTLWDIQKDLKDLNuclear heterogeneous MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRibonucleoprotein A1 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV(HNRNPA1) SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM SEQ ID NO: 7TDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGG YGGSSSSSSYGSGRRFPolycystic kidney disease proteinMAEEAAQNISDDQERCLQAACCLSFGGELSVSTDKSWGLHLCSCS 1-like 1PPGGGLWVEVYANHVLLMSDGKCGCPWCALNGKAEDRESQSPSS (PKD1L1)SASRQKNIWKTTSEAALSVVNEKTQAVVNEKTQAPLDCDNSADRI SEQ ID NO: 8PHKPFIIIARAWSSGGPRFHHRRLCATGTADSTFSALLQLQGTTSAAAPCSLKMEASCCVLRLLCCAEDVATGLLPGTVTMETPTKVARPTQTSSQRVPLWPISHFPTSPRSSHGLPPGIPRTPSFTASQSGSEILYPPTQHPPVAILARNSDNFMNPVLNCSLEVEARAPPNLGFRVHMASGEALCLMMDFGDSSGVEMRLHNMSEAMAVTAYHQYSKGIFFHLLHFQLDMSTYKEAETQNTTLNVYLCQSENSCLEDSDPSNLGYELISAFVTKGVYMLKAVIYNEFHGIEVELGPYYVEIGHEAVSAFMNSSSVHEDEVLVFADSQVNQKSTVVIHHFPSIPSYNVSFISQTQVGDSQAWHSMTVWYKMQSVSVYTNGTVFATDTDITFTAVTKETIPLEFEWYFGEDPPVRTTSRSIKKRLSIPQWYRVMVKASNRMSSVVSEPHVIRVQKKIVANRLTSPSSALVNASVAFECWINFGTDVAYLWDFGDGTVSLGSSSSSHVYSREGEFTVEVLAFNNVSASTLRQQLFIVCEPCQPPLVKNMGPGKVQIWRSQPVRLGVTFEAAVFCDISQGLSYTWNLMDSEGLPVSLPAAVDTHRQTLILPSHTLEYGNYTALAKVQIEGSVVYSNYCVGLEVRAQAPVSVISEGTHLFFSRTTSSPIVLRGTQSFDPDDPGATLRYHWECATAGSPAHPCFDSSTAHQLDAAAPTVSFEAQWLSDSYDQFLVMLRVSSGGRNSSETRVFLSPYPDSAFRFVHISWVSFKDTFVNWNDELSLQAMCEDCSEIPNLSYSWDLFLVNATEKNRIEVPFCRVVGLLGSLGLGAISESSQLNLLPTEPGTADPDATTTPFSREPSPVTLGQPATSAPRGTPTEPMTGVYWIPPAGDSAVLGEAPEEGSLDLEPGPQSKGSLMTGRSERSQPTHSPDPHLSDFEAYYSDIQEAIPSGGRQPAKDTSFPGSGPSLSAEESPGDGDNLVDPSLSAGRAEPVLMIDWPKALLGRAVFQGYSSSGITEQTVTIKPYSLSSGETYVLQVSVASKHGLLGKAQLYLTVNPAPRDMACQVQPHHGLEAHTVFSVFCMSGKPDFHYEFSYQIGNTSKHTLYHGRDTQYYFVLPAGEHLDNYKVMVSTEITDGKGSKVQPCTVVVTVLPRYHGNDCLGEDLYNSSLKNLSTLQLMGSYTEIRNYITVITRILSRLSKEDKTASCNQWSRIQDALISSVCRLAFVDQEEMIGSVLMLRDLVSFSNKLGFMSAVLILKYTRALLAQGQFSGPFVIDKGVRLELIGLISRVWEVSEQENSKEEVYRHEEGITVISDLLLGCLSLNHVSTGQMEFRTLLHYNLQSSVQSLGSVQVHLPGDLAGHSPAGAETQSPCYISQLILFKKNPYPGSQAPGQIGGVVGLNLYTCSSRRPINRQWLRKPVMVEFGEEDGLDNRRNKTTFVLLRDKVNLHQFTELSENPQESLQIEIEFSKPVTRAFPVMLLVRFSEKPTPSDFLVKQIYFWDESIVQIYIPAASQKDASVGYLSLLDADYDRKPPNRYLAKAVNYTVHFQWIRCLFWDKREWKSERFSPQPGTSPEKVNCSYHRLAAFALLRRKLKASFEVSDISKLQSHPENLLPSIFIMGSVILYGFLVAKSRQVDHHEKKKAGYIFLQEASLPGHQLYAVVIDTGFRAPARLTSKVYIVLCGDNGLSETKELSCPEKPLFERNSRHTFILSAPAQLGLLRKIRLWHDSRGPSPGWFISHVMVKELHTGQGWFFPAQCWLSAGRHDGRVERELTCLQGGLGFRKLFYCKFTEYLEDFHVWLSVYSRPSSSRYLHTPRLTVSFSLLCVYACLTALVAAGGQEQPHLDVSPTLGSFRVGLLCTLLASPGAQLLSLLFRLSKEAPGSARVEPHSPLRGGAQTEAPHGPNSWGRIPDAQEPRKQPASAILSGSGRAQRKAASDNGTACPAPKLQVHGADHSRTSLMGKSHCCPPHTQAPSSGLEGLMPQWSRALQPWWSSAVWAICGTASLACSLGTGFLAYRFGQEQCVQWLHLLSLSVVCCIFITQPLMVCLMALGFAWKRRADNHFFTESLCEATRDLDSELAERSWTRLPFSSSCSIPDCAGEVEKVLAARQQARHLRWAHPPSKAQLRGTRQRMRRESRTRAALRDISMDILMLLLLLCVIYGRFSQDEYSLNQAIRKEFTRNARNCLGGLRNIADWWDWSLTTLLDGLYPGGTPSARVPGAQPGALGGKCYLIGSSVIRQLKVFPRHLCKPPRPFSALTEDSIPTCSPEVGGPENPYLIDPENQNVTLNGPGGCGTREDCVLSLGRTRTEAHTALSRLRASMWIDRSTRAVSVHFTLYNPPTQLFTSVSLRVEILPTGSLVPSSLVESFSIFRSDSALQYHLMLPQLVFLALSLIHLCVQLYRMMDKGVLSYWRKPRNWLELSVVGVSLTYYAVSGHLVTLAGDVTNQFHRGLCRAFMDLTLMASWNQRARWLRGILLFLFTLKCVYLPGIQNTMASCSSMMRHSLPSIFVAGLVGALMLAALSHLHRFLLSMWVLPPGTFTDAFPGLLFHFPRRSQKDCLLGLSKSDQRAMACYFGILLIVSATLCFGMLRGFLMTLPQKRKSFQSKSFVRLKDVTAYMWEKVLTFLRLETPKLEEAEMVENHNYYLDEFANLLDELLMKINGLSDSLQLPLLEKTSNNTGEARTEESP LVDISSYQAAEPADIKDFCognate thermal shock protein 71 kDaMSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTor heat shock protein cognate 71 kDaDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKH (HSPA8)WPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEA SEQ ID NO: 9YLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASS GPTIEEVD Anikirina-3MAHAASQLKKNRDLEINAEEEPEKKRKHRKRSRDRKKKSDANAS or Ankyrin-3YLRAARAGHLEKALDYIKNGVDINICNQNGLNALHLASKEGHVEV (ANK3)VSELLQREANVDAATKKGNTALHIASLAGQAEVVKVLVTNGANV SEQ ID NO: 10NAQSQNGFTPLYMAAQENHLEVVKFLLDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPALHIAARKDDTKAAALLLQNDNNADVESKSGFTPLHIAAHYGNINVATLLLNRAAAVDFTARNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRAAPILSKTKNGLSPLHMATQGDHLNCVQLLLQHNVPVDDVTNDYLTALHVAAHCGHYKVAKVLLDKKANPNAKALNGFTPLHIACKKNRIKVMELLLKHGASIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLVQDGAQVEAKAKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLSAREGHEDVAAFLLDHGASLSITTKKGFTPLHVAAKYGKLEVANLLLQKSASPDAAGKSGLTPLHVAAHYDNQKVALLLLDQGASPHAAAKNGYTPLHIAAKKNQMDIATTLLEYGADANAVTRQGIASVHLAAQEGHVDMVSLLLGRNANVNLSNKSGLTPLHLAAQEDRVNVAEVLVNQGAHVDAQTKMGYTPLHVGCHYGNIKIVNFLLQHSAKVNAKTKNGYTPLHQAAQQGHTHIINVLLQNNASPNELTVNGNTALGIARRLGYISVVDTLKIVTEETMTTTTVTEKHKMNVPETMNEVLDMSDDEVRKANAPEMLSDGEYISDVEEGEDAMTGDTDKYLGPQDLKELGDDSLPAEGYMGFSLGARSASLRSFSSDRSYTLNRSSYARDSMMIEELLVPSKEQHLTFTREFDSDSLRHYSWAADTLDNVNLVSSPIHSGFLVSFMVDARGGSMRGSRHHGMRIIIPPRKCTAPTRITCRLVKRHKLANPPPMVEGEGLASRLVEMGPAGAQFLGPVIVEIPHFGSMRGKERELIVLRSENGETWKEHQFDSKNEDLTELLNGMDEELDSPEELGKKRICRIITKDFPQYFAVVSRIKQESNQIGPEGGILSSTTVPLVQASFPEGALTKRIRVGLQAQPVPDEIVKKILGNKATFSPIVTVEPRRRKFHKPITMTIPVPPPSGEGVSNGYKGDTTPNLRLLCSITGGTSPAQWEDITGTTPLTFIKDCVSFTTNVSARFWLADCHQVLETVGLATQLYRELICVPYMAKFVVFAKMNDPVESSLRCFCMTDDKVDKTLEQQENFEEVARSKDIEVLEGKPIYVDCYGNLAPLTKGGQQLVFNFYSFKENRLPFSIKIRDTSQEPCGRLSFLKEPKTTKGLPQTAVCNLNITLPAHKKETESDQDDEIEKTDRRQSFASLALRKRYSYLTEPGMIERSTGATRSLPTTYSYKPFFSTRPYQSWTTAPITVPGPAKSGFTSLSSSSSNTPSASPLKSIWSVSTPSPIKSTLGASTTSSVKSISDVASPIRSFRTMSSPIKTVVSQSPYNIQVSSGTLARAPAVTEATPLKGLASNSTFSSRTSPVTTAGSLLERSSITMTPPASPKSNINMYSSSLPFKSIITSAAPLISSPLKSVVSPVKSAVDVISSAKITMASSLSSPVKQMPGHAEVALVNGSISPLKYPSSSTLINGCKATATLQEKISSATNSVSSVVSAATDTVEKVFSTTTAMPFSPLRSYVSAAPSAFQSLRTPSASALYTSLGSSISATTSSVTSSIITVPVYSVVNVLPEPALKKLPDSNSFTKSAAALLSPIKTLTTETHPQPHFSRTSSPVKSSLFLAPSALKLSTPSSLSSSQEILKDVAEMKEDLMRMTAILQTDVPEEKPFQPELPKEGRIDDEEPFKIVEKVKEDLVKVSEILKKDVCVDNKGSPKSPKSDKGHSPEDDWIEFSSEEIREARQQAAASQSPSLPERVQVKAKAASEKDYNLTKVIDYLTNDIGSSSLTNLKYKFEDAKKDGEERQKRVLKPAIALQEHKLKMPPASMRTSTSEKELCKMADSFFGTDTILESPDDFSQHDQDKSPLSDSGFETRSEKTPSAPQSAESTGPKPLFHEVPIPPVITETRTEVVHVIRSYDPSAGDVPQTQPEEPVSPKPSPTFMELEPKPTTSSIKEKVKAFQMKASSEEDDHNRVLSKGMRVKEETHITTTTRMVYHSPPGGEGASERIEETMSVHDIMKAFQSGRDPSKELAGLFEHKSAVSPDVHKSAAETSAQHAEKDNQMKPKLERIIEVHIEKGNQAEPTEVHRETKKHPEKEMYVYQKDLSRGDINLKDFLPEKHDAFPCSEEQGQQEEEELTAEESLPSYLESSRVNTPVSQEEDSRPSSAQLISDDSYKTLKLLSQHSIEYHDDELSELRGESYRFAEKMLLSEKLDVSHSDIEESVTDHAGPPSSELQGSDKRSREKIATAPKKEILSKIYKDVSENGVGKVSKDEHFDKVTVLHYSGNVSSPKHAMWMRFTEDRLDRGREKLIYEDRVDRTVKEAEEKLTEVSQFFRDKTEKLNDELQSPEKKARPKNGKEYSSQSPTSSSPEKVLLTELLASNDEWVKARQHGPDGQGFPKAEEKAPSLPSSPEKMVLSQQTEDSKSTVEAKGSISQSKAPDGPQSGFQLKQSKLSSIRLKFEQGTHAKSKDMSQEDRKSDGQSRIPVKKIQESKLPVYQVFAREKQQKAIDLPDESVSVQKDFMVLKTKDEHAQSNEIVVNDSGSDNVKKQRTEMSSKAMPDSFSEQQAKDLACHITSDLATRGPWDKKVFRTWESSGATNNKSQKEKLSHVLVHDVRENHIGHPESKSVDQKNEFMSVTERERKLLTNGSLSEIKEMTVKSPSKKVLYREYVVKEGDHPGGLLDQPSRRSESSAVSHIPVRVADERRMLSSNIPDGFCEQSAFPKHELSQKLSQSSMSKETVETQHFNSIEDEKVTYSEISKVSKHQSYVGLCPPLEETETSPTKSPDSLEFSPGKESPSSDVFDHSPIDGLEKLAPLAQTEGGKEIKTLPVYVSFVQVGKQYEKEIQQGGVKKIISQECKTVQETRGTFYTTRQQKQPPSPQGSPEDDTLEQVSFLDSSGKSPLTPETPSSEEVSYEFTSKTPDSLIAYIPGKPSPIPEVSEESEEEEQAKSTSLKQTTVEETAVEREMPNDVSKDSNQRPKNNRVAYIEFPPPPPLDADQIESDKKHHYLPEKEVDMIEVNLQDEHDKYQLAEPVIRVQPPSPVPPGADVSDSSDDESIYQPVPVKKYTFKLKEVDDEQKEKPKASAEKASNQKELESNGSGKDNEFGLGLDSPQNEIAQNGNNDQSITECSIATTAEFSHDTDATEIDSLDGYDLQDEDDGLTESDSKLPIQAMEIKKDIWNTEGILKPADRSFSQSKLEVIEEEGKVGPDEDKPPSKSSSSEKTPDKTDQKSGAQFFTLEGRHPDRSVFPDTYFSYKVDEEFATPFKTVATKGLDFDPWSNNRGDDEVFDSKSREDETKPFGLAVEDRSPATTPDTTPARTPTDESTPTSEPNPFPFHEGKMFEMTRSGAIDMSKRDFVEERLQFFQIGEHTSEGKSGDQGEGDKSMVTATPQPQSGDTTVETNLERNVETPTVEPNPSIPTSGECQEGTSSSGSLEKSAAATNTSKVDPKLRTPIKMGISASTMTMKKEGPGEITDKIEAVMTSCQGLENETITMISNTANSQMGVRPHEKHDFQKDNFNNNNNLDSSTIQTDNIMSNIVLTEHSAPTCTTEKDNPVKVSSGKKTGVLQGHCVRDKQKVLGEQQKTKELIGIRQKSKLPIKATSPKDTFPPNHMSNTKASKMKQVSQSEKTKALTTSSCVDVKSRIPVKNTHRDNIIAVRKACATQKQGQPEKGKAKQLPSKLPVKVRSTCVTTTTTTATTTTTTTTTTTTSCTVKVRKSQLKEVCKHSIEYFKGISGETLKLVDRLSEEEKKMQSELSDEEESTSRNTSLSETSRGGQPSVTTKSARDKKTEAAPLKSKSEKAGSEKRSSRRTGPQSPCERTDIRMAIVADHLGLSWTELARELNFSVDEINQIRVENPNSLISQSFMLLKKWVTRDGKNATTDALTSVLTKINRIDIVTLLEGPIFDYGNISGTRSFADENNVFHDPVDGWQNETSSGNLESCAQARRVTGGLLDRLDDSPDQCRDSITSYLKGEAGKFEANGSHTEITPEAKTKSYFPESQNDVGKQSTKETLKPKIHGSGHVEEPASPLAAYQKSLEETSKLIIEETKPCVPVSMKKMSRTSPADGKPRLSLHEEEGSSGSEQKQGEGFKV KTKKEIRHVEKKSHS Rho 23MNGVAFCLVGIPPRPEPRPPQLPLGPRDGCSPRRPFPWQGPRTLLLor Rho GTPase-activating protein 23YKSPQDGFGFTLRHFIVYPPESAVHCSLKEEENGGRGGGPSPRYRL (ARHGAP23)EPMDTIFVKNVKEDGPAHRAGLRTGDRLVKVNGESVIGKTYSQVI SEQ ID NO: 11ALIQNSDDTLELSIMPKDEDILQLAYSQDAYLKGNEPYSGEARSIPEPPPICYPRKTYAPPARASTRATMVPEPTSALPSDPRSPAAWSDPGLRVPPAARAHLDNSSLGMSQPRPSPGAFPHLSSEPRTPRAFPEPGSRVPPSRLECQQALSHWLSNQVPRRAGERRCPAMAPRARSASQDRLEEVAAPRPWPCSTSQDALSQLGQEGWHRARSDDYLSRATRSAEALGPGALVSPRFERCGWASQRSSARTPACPTRDLPGPQAPPPSGLQGLDDLGYIGYRSYSPSFQRRTGLLHALSFRDSPFGGLPTFNLAQSPASFPPEASEPPRVVRPEPSTRALEPPAEDRGDEVVLRQKPPTGRKVQLTPARQMNLGFGDESPEPEASGRGERLGRKVAPLATTEDSLASIPFIDEPTSPSIDLQAKHVPASAVVSSAMNSAPVLGTSPSSPTFTFTLGRHYSQDCSSIKAGRRSSYLLAITTERSKSCDDGLNTFRDEGRVLRRLPNRIPSLRMLRSFFTDGSLDSWGTSEDADAPSKRHSTSDLSDATFSDIRREGWLYYKQILTKKGKKAGSGLRQWKRVYAALRARSLSLSKERREPGPAAAGAAAAGAGEDEAAPVCIGSCLVDISYSETKRRHVFRLTTADFCEYLFQAEDRDDMLGWIRAIRENSRAEGEDPGCANQALISKKLNDYRKVSHSSGPKADSSPKGSRGLGGLKSEFLKQSAARGLRTQDLPAGSKDDSAAAPKTPWGINIIKKNKKAAPRAFGVRLEECQPATENQRVPLIVAACCRIVEARGLESTGIYRVPGNNAVVSSLQEQLNRGPGDINLQDERWQDLNVISSLLKSFFRKLPEPLFTDDKYNDFIEANRIEDARERMRTLRKLIRDLPGHYYETLKFLVGHLKTIADHSEKNKMEPRNLALVFGPTLVRTSEDNMTDMVTHMPDRYKIVETLIQHSDWFFSDEEDKGERTPVGDKEPQAVPNIEYLLPNIGRTVPPGDPGSDSTTCSSAKSKGSWAPKKEPYAREMLAISFISAVNRKRKKRREARGLGSSTDDDSEQEAHKPGAGATAPGTQERPQGPLPGAVAPEAPGRLSPPAAPEERPAADTRSIVSGYSTLSTMDRSVCSGASGRRAGAGDEADDERSELSHVETDTEGAAGAGPGGRLTRRPSFSSHHLMPCDTLARRRLARGRPDGEGAGRGGPRAPEPPGSASSSSQESLRPPAAALASRPSRMEALRLRLRGTADDMLAVRLRRPLSPETRRRRSSWRRHTVVVQSPLTDLNFNEWKELGGGGPPEPAGARAHSDNKDSGLSSLESTKARAPSSAASQPPAPGDTGSLQSQPPRRSAASRLHQCL Cytoskeletal Keratin 78 type IIMSLSPCRAQRGFSARSACSARSRGRSRGGFSSRGGFSSRSLNSFGGor Keratin, type II cytoskeletal 78CLEGSRGSTWGSGGRLGVRFGEWSGGPGLSLCPPGGIQEVTINQNL (KRT78)LTPLKIEIDPQFQVVRTQETQEIRTLNNQFASFIDKVRFLEQQNKVL SEQ ID NO: 12ETKWHLLQQQGLSGSQQGLEPVFEACLDQLRKQLEQLQGERGALDAELKACRDQEEEYKSKYEEEAHRRATLENDFVVLKKDVDGVFLSKMELEGKLEALREYLYFLKHLNEEELGQLQTQASDTSVVLSMDNNRYLDFSSIIILVRARYEEIARSSKAEAEALYQTKYQELQVSAQLHGDRMQETKVQISQLHQEIQRLQSQIENLKKQNASLQAAITDAEQRGELALKDAQAKVDELEAALRMAKQNLARLLCEYQELTSTKLSLDVEIATYRRLLEGEECRMSGECTSQVTISSVGGSAVMSGGVGGGLGSTCGLGSGKGSPGSCCTSIVTGGSNIILGSGKDPVLDSCSVSGSSAG SSCHTILKKTVESSLKTSITYAlpha-3 collagen chain (VI)MRKHRHLPLVAVFCLFLSGFPTTHAQQQQADVKNGAAADIIFLVDor Collagen type VI, alpha 3SSWTIGEEHFQLVREFLYDVVKSLAVGENDFHFALVQFNGNPHTE (COL6A3)FLLNTYRTKQEVLSHISNMSYIGGTNQTGKGLEYIMQSHLTKAAGS SEQ ID NO: 13RAGDGVPQVIVVLTDGHSKDGLALPSAELKSADVNVFAIGVEDADEGALKEIASEPLNMHMFNLENFTSLHDIVGNLVSCVHSSVSPERAGDIETLKDITAQDSADIIFLIDGSNNTGSVNFAVILDFLVNLLEKLPIGTQQIRVGVVQFSDEPRTMFSLDTYSTKAQVLGAVKALGFAGGELANIGLALDFVVENHFTRAGGSRVEEGVPQVLVLISAGPSSDEIRYGVVALKQASVFSFGLGAQAASRAELQHIATDDNLVFTVPEFRSFGDLQEKLLPYIVGVAQRHIVLKPPTIVTQVIEVNKRDIVFLVDGSSALGLANFNAIRDFIAKVIQRLEIGQDLIQVAVAQYADTVRPEFYFNTHPTKREVITAVRKMKPLDGSALYTGSALDFVRNNLFTSSAGYRAAEGIPKLLVLITGGKSLDEISQPAQELKRSSIMAFAIGNKGADQAELEEIAFDSSLVFIPAEFRAAPLQGMLPGLLAPLRTLSGTPEVHSNKRDIIFLLDGSANVGKTNFPYVRDFVMNLVNSLDIGNDNIRVGLVQFSDTPVTEFSLNTYQTKSDILGHLRQLQLQGGSGLNTGSALSYVYANHFTEAGGSRIREHVPQLLLLLTAGQSEDSYLQAANALTRAGILTFCVGASQANKAELEQIAFNPSLVYLMDDFSSLPALPQQLIQPLTTYVSGGVEEVPLAQPESKRDILFLFDGSANLVGQFPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDVKVESRFDEHQSKPEILNLVKRMKIKTGKALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAGRSSDRVDGPASNLKQSGVVPFIFQAKNADPAELEQIVLSPAFILAAESLPKIGDLHPQIVNLLKSVHNGAPAPVSGEKDVVFLLDGSEGVRSGFPLLKEFVQRVVESLDVGQDRVRVAVVQYSDRTRPEFYLNSYMNKQDVVNAVRQLTLLGGPTPNTGAALEFVLRNILVSSAGSRITEGVPQLLIVLTADRSGDDVRNPSVVVKRGGAVPIGIGIGNADITEMQTISFIPDFAVAIPTFRQLGTVQQVISERVTQLTREELSRLQPVLQPLPSPGVGGKRDVVFLIDGSQSAGPEFQYVRTLIERLVDYLDVGFDTTRVAVIQFSDDPKVEFLLNAHSSKDEVQNAVQRLRPKGGRQINVGNALEYVSRNIFKRPLGSRIEEGVPQFLVLISSGKSDDEVDDPAVELKQFGVAPFTIARNADQEELVKISLSPEYVFSVSTFRELPSLEQKLLTPITTLTSEQIQKLLASTRYPPPAVESDAADIVFLIDSSEGVRPDGFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVLDAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFAQVIRSSGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGPSAATPAPPGVDTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNSDPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQELSELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAILNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYVLTEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILVGLERVVNLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGPIGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPGEPGPKGGIGNRGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGDPGYPGPAGPKGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFPTELAFALDTSEGVNQDTFGRMRDVVLSIVNDLTIAESNCPRGARVAVVTYNNEVTTEIRFADSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPTRASPQLREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCHVCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYLVRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRGMTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCKGYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENAFYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKMATVRPPVAVKPATAAKPVAAKPAAVRPPAAAAAKPVATKPEVPRPQAAKPAATKPATTKPMVKMSREVQVFEITENSAKLHWERAEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCYLRSQVRATYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTCRDFILKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCA PVLAKPGVISVMGTBeta subunit of proteasome type-5MALASVLERPLPVNQRGFFGLGGRADLLDLGPGSLSDGLSLAAPGor Proteasome subunit beta type-5WGVPEEPGIEMLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTV (PSMB5)KKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVA SEQ ID NO: 14AASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYSGSTP Heterogeneous nuclearMEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGK ribonucleoproteins A2/B1LTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRV (HNRNPA2B1)VEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEY SEQ ID NO: 15GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY Histone H2B type 1-BMPEPSKSAPAPKKGSKKAITKAQKKDGKKRKRSRKESYSIYVYKV (HIST1H2BB)LKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITS SEQ ID NO: 16REIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK homolog of DnaJ subfamily C memberMNIIRENKDLACFYTTKHSWRGKYKRVFSVGTHAITTYNPNTLEV 13TNQWPYGDICSISPVGKGQGTEFNLTFRKGSGKKSETLKFSIEHRTor DnaJ homolog subfamily C memberELLTEALRFRTDFSEGKITGRRYNCYKHHWSDSRKPVILEVTPGGF 13DQINPATNRVLCSYDYRNIEGFVDLSDYQGGFCILYGGFSRLHLFA (DNAJC13)SEQREEIIKSAIDHAGNYIGISLRIRKEPLEFEQYLNLRFGKYSTDESI SEQ ID NO: 17TSLAEFVVQKISPRHSEPVKRVLALTETCLVERDPATYNIATLKPLGEVFALVCDSENPQLFTIEFIKGQVRKYSSTERDSLLASLLDGVRASGNRDVCVKMTPTHKGQRWGLLSMPVDEEVESLHLRFLATPPNGNFADAVFRFNANISYSGVLHAVTQDGLFSENKEKLINNAITALLSQEGDVVASNAELESQFQAVRRLVASKAGFLAFTQLPKFRERLGVKVVKALKRSNNGIIHAAVDMLCALMCPMHDDYDLRQEQLNKASLLSSKKFLENLLEKFNSHVDHGTGALVISSLLDFLTFALCAPYSETTEGQQFDMLLEMVASNGRTLFKLFQHPSMAIIKGAGLVMKAIIEEGDKEIATKMQELALSEGALPRHLHTAMFTISSDQRMLTNRQLSRHLVGLWTADNATATNLLKRILPPGLLAYLESSDLVPEKDADRMHVRDNVKIAMDQYGKFNKVPEWQRLAGKAAKEVEKFAKEKVDLVLMHWRDRMGIAQKENINQKPVVLRKRRQRIKIEANWDLFYYRFGQDHARSNLIWNFKTREELKDTLESEMRAFNIDRELGSANVISWNHHEFEVKYECLAEEIKIGDYYLRLLLEEDENEESGSIKRSYEFFNELYHRFLLTPKVNMKCLCLQALAIVYGRCHEEIGPFTDTRYIIGMLERCTDKLERDRLILFLNKLILNKKNVKDLMDSNGIRILVDLLTLAHLHVSRATVPLQSNVIEAAPDMKRESEKEWYFGNADKERSGPYGFHEMQELWTKGMLNAKTRCWAQGMDGWRPLQSIPQLKWCLLASGQAVLNETDLATLILNMLITMCGYFPSRDQDNAIIRPLPKVKRLLSDSTCLPHIIQLLLTFDPILVEKVAILLYHIMQDNPQLPRLYLSGVFFFIMMYTGSNVLPVARFLKYTHTKQAFKSEETKGQDIFQRSILGHILPEAMVCYLENYEPEKFSEIFLGEFDTPEAIWSSEMRRLMEEKIAAHLADFTPRLQSNTRALYQYCPIPIINYPQLENELFCNIYYLKQLCDTLRFPDWPIKDPVKLLKDTLDAWKKEVEKKPPMMSIDDAYEVLNLPQGQGPHDESKIRKAYFRLAQKYHPDKNPEGRDMFEKVNKAYEFLCTKSAKIVDGPDPENIILILKTQSILFNRHKEDLQPYKYAGYPMLIRTITMETSDDLLFSKESPLLPAAIELAFHTVNCSALNAEELRRENGLEVLQEAFSRCVAVLTRASKPSDMSVQVCGYISKCYSVAAQFEECREKITEMPSIIKDLCRVLYFGKSIPRVAALGVECVSSFAVDFWLQTHLFQAGILWYLLGFLFNYDYTLEESGIQKSEETNQQEVANSLAKLSVHALSRLGGYLAEEQATPENPTIRKSLAGMLTPYVARKLAVASVTEILKMLNSNTESPYLIWNNSTRAELLEFLESQQENMIKKGDCDKTYGSEFVYSDHAKELIVGEIFVRVYNEVPTFQLEVPKAFAASLLDYIGSQAQYLHTFMAITHAAKVESEQHGDRLPRVEMALEALRNVIKYNPGSESECIGHFKLIFSLLRVHGAGQVQQLALEVVNIVTSNQDCVNNIAESMVLSSLLALLHSLPSSRQLVLETLYALTSSTKIIKEAMAKGALIYLLDMFCNSTHPQVRAQTAELFAKMTADKLIGPKVRITLMKFLPSVFMDAMRDNPEAAVHIFEGTHENPELIWNDNSRDKVSTTVREMMLEHFKNQQDNPEANWKLPEDFAVVFGEAEGELAVGGVFLRIFIAQPAWVLRKPREFLIALLEKLFELLEKNNPHGETLETLTMATVCLFSAQPQLADQVPPLGHLPKVIQAMNHRNNAIPKSAIRVIHALSENELCVRAMASLETIGPLMNGMKKRADTVGLACEAINRMFQKEQSELVAQALKADLVPYLLKLLEGIGLENLDSPAATKAQIVKALKAMTRSLQYGEQVNEILCRSSVWSAFKDQKHDLFISESQTAGYLTGPGVAGYLTAGTSTSVMSNLPPPVDHEAGDLGY QT Beta enolaseMAMQKIFAREILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYE (ENO3)ALELRDGDKGRYLGKGVLKAVENINNTLGPALLQKKLSVVDQEK SEQ ID NO: 18VDKFMIELDGTENKSKFGANAILGVSLAVCKAGAAEKGVPLYRHIADLAGNPDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMRIGAEVYHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAGYPDKVVIGMDVAASEFYRNGKYDLDFKSPDDPARHITGEKLGELYKSFIKNYPVVSIEDPFDQDDWATWTSFLSGVNIQIVGDDLTVTNPKRIAQAVEKKACNCLLLKVNQIGSVTESIQACKLAQSNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEALGDKAIFAGRKFRNPKAK Glutathione S-transferase PMPPYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTVETWQEGS (GSTP1)LKASCLYGQLPKFQDGDLTLYQSNTILRHLGRTLGLYGKDQQEAA SEQ ID NO: 19LVDMVNDGVEDLRCKYISLIYTNYEAGKDDYVKALPGQLKPFETLLSQNQGGKTFIVGDQISFADYNLLDLLLIHEVLAPGCLDAFPLLSAYVGRLSARPKLKAFLASPEYVNLPINGNGKQ Glutathione 5-transferase Mu 3MSCESSMVLGYWDIRGLAHAIRLLLEFTDTSYEEKRYTCGEAPDY (GSTM3)DRSQWLDVKFKLDLDFPNLPYLLDGKNKITQSNAILRYIARKHNM SEQ ID NO: 20CGETEEEKIRVDIIENQVMDFRTQLIRLCYSSDHEKLKPQYLEELPGQLKQFSMFLGKFSWFAGEKLTFVDFLTYDILDQNRIFDPKCLDEFPNLKAFMCRFEALEKIAAYLQSDQFCKMPINNKMAQWGNKPVCFarnesyl pyrophosphate synthaseMPLSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVLAW Variant 2HSARCWCQAWTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFS SEQ ID NO: 21QIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAV FLGLARKIYKRRKFarnesyl pyrophosphate synthaseMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARL Variant 3KEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVG SEQ ID NO: 22WCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK Farnesyl pyrophosphate synthaseMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARL Variant 4KEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVG SEQ ID NO: 23WCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK Farnesyl pyrophosphate synthaseMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQ Variant 5PYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIV SEQ ID NO: 24KYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQY AAPLPPAVFLGLARKIYKRRKFarnesyl pyrophosphate synthaseMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARL Variant 6KEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVG SEQ ID NO: 25WCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK Farnesyl pyrophosphate synthaseMPLSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVLAW Variant 7HSARCWCQAWTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFS SEQ ID NO: 26QIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFY SFYLFarnesyl pyrophosphate synthaseMPLSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVLAW Variant 8HSARCWCQAWTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFS SEQ ID NO: 27QIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDS Neurofibromin 1MAAHRPVEWVQAVVSRFDEQLPIKTGQQNTHTKVSTEHNKECLIN Variant 2ISKYKFSLVISGLTTILKNVNNMRIFGEAAEKNLYLSQLIILDTLEKC SEQ ID NO: 28LAGQPKDTMRLDETMLVKQLLPEICHFLHTCREGNQHAAELRNSASGVLFSLSCNNFNAVFSRISTRLQELTVCSEDNVDVHDIELLQYINVDCAKLKRLLKETAFKFKALKKVAQLAVINSLEKAFWNWVENYPDEFTKLYQIPQTDMAECAEKLFDLVDGFAESTKRKAAVWPLQIILLILCPEIIQDISKDVVDENNMNKKLFLDSLRKALAGHGGSRQLTESAAIACVKLCKASTYINWEDNSVIFLLVQSMVVDLKNLLFNPSKPFSRGSQPADVDLMIDCLVSCFRISPHNNQHFKICLAQNSPSTFHYVLVNSLHRIITNSALDWWPKIDAVYCHSVELRNMFGETLHKAVQGCGAHPAIRMAPSLTFKEKVTSLKFKEKPTDLETRSYKYLLLSMVKLIHADPKLLLCNPRKQGPETQGSTAELITGLVQLVPQSHMPEIAQEAMEALLVLHQLDSIDLWNPDAPVETFWEISSQMLFYICKKLTSHQMLSSTEILKWLREILICRNKFLLKNKQADRSSCHFLLFYGVGCDIPSSGNTSQMSMDHEELLRTPGASLRKGKGNSSMDSAAGCSGTPPICRQAQTKLEVALYMFLWNPDTEAVLVAMSCFRHLCEEADIRCGVDEVSVHNLLPNYNTFMEFASVSNMMSTGRAALQKRVMALLRRIEHPTAGNTEAWEDTHAKWEQATKLILNYPKAKMEDGQAAESLHKTIVKRRMSHVSGGGSIDLSDTDSLQEWINMTGFLCALGGVCLQQRSNSGLATYSPPMGPVSERKGSMISVMSSEGNADTPVSKFMDRLLSLMVCNHEKVGLQIRTNVKDLVGLELSPALYPMLFNKLKNTISKFFDSQGQVLLTDTNTQFVEQTIAIMKNLLDNHTEGSSEHLGQASIETMMLNLVRYVRVLGNMVHAIQIKTKLCQLVEVMMARRDDLSFCQEMKFRNKMVEYLTDWVMGTSNQAADDDVKCLTRDLDQASMEAVVSLLAGLPLQPEEGDGVELMEAKSQLFLKYFTLFMNLLNDCSEVEDESAQTGGRKRGMSRRLASLRHCTVLAMSNLLNANVDSGLMHSIGLGYHKDLQTRATFMEVLTKILQQGIEFDTLAETVLADRFERLVELVTMMGDQGELPIAMALANVVPCSQWDELARVLVTLFDSRHLLYQLLWNMFSKEVELADSMQTLFRGNSLASKIMTFCFKVYGATYLQKLLDPLLRIVITSSDWQHVSFEVDPTRLEPSESLEENQRNLLQMTEKFFHAIISSSSEFPPQLRSVCHCLYQVVSQRFPQNSIGAVGSAMFLRFINPAIVSPYEAGILDKKPPPRIERGLKLMSKILQSIANHVLFTKEEHMRPFNDFVKSNFDAARRFFLDIASDCPTSDAVNHSLSFISDGNVLALHRLLWNNQEKIGQYLSSNRDHKAVGRRPFDKMATLLAYLGPPEHKPVADTHWSSLNLTSSKFEEFMTRHQVHEKEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYEIVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCPGKLAEHIEHEQQKLPAATLALEEDLKVFHNALKLAHKDTKVSIKVGSTAVQVTSAERTKVLGQSVFLNDIYYASEIEEICLVDENQFTLTIANQGTPLTFMHQECEAIVQSIIHIRTRWELSQPDSIPQHTKIRPKDVPGTLLNIALLNLGSSDPSLRSAAYNLLCALTCTFNLKIEGQLLETSGLCIPANNTLFIVSISKTLAANEPHLTLEFLEECISGFSKSSIELKHLCLEYMTPWLSNLVRFCKHNDDAKRQRVTAILDKLITMTINEKQMYPSIQAKIWGSLGQITDLLDVVLDSFIKTSATGGLGSIKAEVMADTAVALASGNVKLVSSKVIGRMCKIIDKTCLSPTPTLEQHLMWDDIAILARYMLMLSFNNSLDVAAHLPYLFHVVTFLVATGPLSLRASTHGLVINIIHSLCTCSQLHFSEETKQVLRLSLTEFSLPKFYLLFGISKVKSAAVIAFRSSYRDRSFSPGSYERETFALTSLETVTEALLEIMEACMRDIPTCKWLDQWTELAQRFAFQYNPSLQPRALVVFGCISKRVSHGQIKQIIRILSKALESCLKGPDTYNSQVLIEATVIALTKLQPLLNKDSPLHKALFWVAVAVLQLDEVNLYSAGTALLEQNLHTLDSLRIFNDKSPEEVFMAIRNPLEWHCKQMDHFVGLNFNSNFNFALVGHLLKGYRHPSPAIVARTVRILHTLLTLVNKHRNCDKFEVNTQSVAYLAALLTVSEEVRSRCSLKHRKSLLLTDISMENVPMDTYPIHHGDPSYRTLKETQPWSSPKGSEGYLAATYPTVGQTSPRARKSMSLDMGQPSQANTKKLLGTRKSFDHLISDTKAPKRQEMESGITTPPKMRRVAETDYEMETQRISSSQQHPHLRKVSVSESNVLLDEEVLTDPKIQALLLTVLATLVKYTTDEFDQRILYEYLAEASVVFPKVFPVVHNLLDSKINTLLSLCQDPNLLNPIHGIVQSVVYHEESPPQYQTSYLQSFGFNGLWRFAGPFSKQTQIPDYAELIVKFLDALIDTYLPGIDEETSEESLLTPTSPYPPALQSQLSITANLNLSNSMTSLATSQHSPGIDKENVELSPTTGHCNSGRTRHGSASQVQKQRSAGSFKRNSIKKIV Neurofibromin 1MAAHRPVEWVQAVVSRFDEQLPIKTGQQNTHTKVSIEHNKECLIN Variant 3ISKYKFSLVISGLTTILKNVNNMRIFGEAAEKNLYLSQLIILDTLEKC SEQ ID NO: 29LAGQPKDTMRLDETMLVKQLLPEICHFLHTCREGNQHAAELRNSASGVLFSLSCNNFNAVFSRISTRLQELTVCSEDNVDVHDIELLQYINVDCAKLKRLLKETAFKFKALKKVAQLAVINSLEKAFWNWVENYPDEFTKLYQIPQTDMAECAEKLFDLVDGFAESTKRKAAVWPLQIILLILCPEIIQDISKDVVDENNMNKKLFLDSLRKALAGHGGSRQLTESAAIACVKLCKASTYINWEDNSVIFLLVQSMVVDLKNLLFNPSKPFSRGSQPADVDLMIDCLVSCFRISPHNNQHFKICLAQNSPSTFHYVLVNSLHRIITNSALDWWPKIDAVYCHSVELRNMFGETLHKAVQGCGAHPAIRMAPSLTFKEKVTSLKFKEKPTDLETRSYKYLLLSMVKLIHADPKLLLCNPRKQGPETQGSTAELITGLVQLVPQSHMPEIAQEAMEALLVLHQLDSIDLWNPDAPVETFWEIRYMYFYFLNSTFKFYFVFLS Neurofibromin 1NWEDNSVIFLLVQSMVVDLKNLLFNPSKPFSRGSQPADVDLMIDC Variant 4LVSCFRISPHNNQHFKICLAQNSPSTFHYVLVNSLHRIITNSALDWW SEQ ID NO: 30PKIDAVYCHSVELRNMFGETLHKAVQGCGAHPAIRMAPSLTFKEKVTSLKFKEKPTDLETRSYKYLLLSMVKLIHADPKLLLCNPRKQGPETQGSTAELITGLVQLVPQSHMPEIAQEAMEALLVLHQLDSIDLWNPDAPVETFWEISSQMLFYICKKLTSHQMLSSTEILKWLREILICRNKFLLKNKQADRSSCHFLLFYGVGCDIPSSGNTSQMSMDHEELLRTPGASLRKGKGNSSMDSAAGCSGTPPICRQAQTKLEVALYMFLWNPDTEAVLVAMSCFRHLCEEADIRCGVDEVSVHNLLPNYNTFMEFASVSNMMSTGRAALQKRVMALLRRIEHPTAGNTEAWEDTHAKWEQATKLILNYPKAKMEDGQAAESLHKTIVKRRMSHVSGGGSIDLSDTDSLQEWINMTGFLCALGGVCLQQRSNSGLATYSPPMGPVSERKGSMISVMSSEGNADTPVSKFMDRLLSLMVCNHEKVGLQIRTNVKDLVGLELSPALYPMLFNKLKNTISKFFDSQGQVLLTDTNTQFVEQTIAIMKNLLDNHTEGSSEHLGQASIETMMLNLVRYVRVLGNMVHAIQIKTKLCQLVEVMMARRDDLSFCQEMKFRNKMVEYLTDWVMGTSNQAADDDVKCLTRDLDQASMEAVVSLLAGLPLQPEEGDGVELMEAKSQLFLKYFTLFMNLLNDCSEVEDESAQTGGRKRGMSRRLASLRHCTVLAMSNLLNANVDSGLMHSIGLGYHKDLQTRATFMEVLTKILQQGTEFDTLAETVLADRFERLVELVTMMGDQGELPIAMALANVVPCSQWDELARVLVTLFDSRHLLYQLLWNMFSKEVELADSMQTLFRGNSLASKIMTFCFKVYGATYLQKLLDPLLRIVITSSDWQHVSFEVDPTRLEPSESLEENQRNLLQMTEKFFHAIISSSSEFPPQLRSVCHCLYQVVSQRFPQNSIGAVGSAMFLRFINPAIVSPYEAGILDKKPPPRIERGLKLMSKILQSIANHVLFTKEEHMRPFNDFVKSNFDAARRFFLDIASDCPTSDAVNHSLSFISDGNVLALHRLLWNNQEKIGQYLSSNRDHKAVGRRPFDKMATLLAYLGPPEHKPVADTHWSSLNLTSSKFEEFMTRHQVHEKEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYEIVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCPGKLAEHIEHEQQKLPAATLALEEDLKVFHNALKLAHKDTKVSIKVGSTAVQVTSAERTKVLGQSVFLNDIYYASEIEEICLVDENQFTLTIANQGTPLTFMHQECEAIVQSIIHIRTRWELSQPDSIPQHTKIRPKDVPGTLLNIALLNLGSSDPSLRSAAYNLLCALTCTFNLKIEGQLLETSGLCIPANNTLFIVSISKTLAANEPHLTLEFLEECISGFSKSSIELKHLCLEYMTPWLSNLVRFCKHNDDAKRQRVTAILDKLITMTINEKQMYPSIQAKIWGSLGQITDLLDVVLDSFIKTSATGGLGSIKAEVMADTAVALASGNVKLVSSKVIGRMCKIIDKTCLSPTPTLEQHLMWDDIAILARYMLMLSFNNSLDVAAHLPYLFHVVTFLVATGPLSLRASTHGLVINIIHSLCTCSQLHFSEETKQVLRLSLTEFSLPKFYLLFGISKVKSAAVIAFRSSYRDRSFSPGSYERETFALTSLETVTEALLEIMEACMRDIPTCKWLDQWTELAQRFAFQYNPSLQPRALVVFGCISKRVSHGQIKQIIRILSKALESCLKGPDTYNSQVLIEATVIALTKLQPLLNKDSPLHKALFWVAVAVLQLDEVNLYSAGTALLEQNLHTLDSLRIFNDKSPEEVFMAIRNPLEWHCKQMDHFVGLNFNSNFNFALVGHLLKGYRHPSPAIVARTVRILHTLLTLVNKHRNCDKFEVNTQSVAYLAALLTVSEEVRSRCSLKHRKSLLLTDISMENVPMDTYPIHHGDPSYRTLKETQPWSSPKGSEGYLAATYPTVGQTSPRARKSMSLDMGQPSQANTKKLLGTRKSFDHLISDTKAPKRQEMESGITTPPKMRRVAETDYEMETQRISSSQQHPHLRKVSVSESNVLLDEEVLTDPKIQALLLTVLATLVKYTTDEFDQRILYEYLAEASVVFPKVFPVVHNLLDSKINTLLSLCQDPNLLNPIHGIVQSVVYHEESPPQYQTSYLQSFGFNGLWRFAGPFSKQTQIPDYAELIVKFLDALIDTYLPGIDEETSEESLLTPTSPYPPALQSQLSITANLNLSNSMTSLATSQHSPASLPCSKSAVFMQLFPHQGIDKENVELSPTTGHCNSGRTRHGSASQVQKQRSAGSFKRNSIKKIV Neurofibromin 1MAAHRPVEWVQAVVSRFDEQLPIKTGQQNTHTKVSTEHNKECLIN Variant 5ISKYKFSLVISGLTTILKNVNNMRIFGEAAEKNLYLSQLIILDTLEKC SEQ ID NO: 31LAGQPKDTMRLDETMLVKQLLPEICHFLHTCREGNQHAAELRNSASGVLFSLSCNNFNAVFSRISTRLQELTVCSEDNVDVHDIELLQYINVDCAKLKRLLKETAFKFKALKKVAQLAVINSLEKAFWNWVENYPDEFTKLYQIPQTDMAECAEKLFDLVDGFAESTKRKAAVWPLQIILLILCPEIIQDISKDVVDENNMNKKLFLDSLRKALAGHGGSRQLTESAAIACVKLCKASTYINWEDNSVIFLLVQSMVVDLKNLLFNPSKPFSRGSQPADVDLMIDCLVSCFRISPHNNQHFKICLAQNSPSTFHYVLVNSLHRIITNSALDWWPKIDAVYCHSVELRNMFGETLHKAVQGCGAHPAIRMAPSLTFKEKVTSLKFKEKPTDLETRSYKYLLLSMVKLIHADPKLLLCNPRKQGPETQGSTAELITGLVQLVPQSHMPEIAQEAMEVRG K Neurofibromin 1MHQECEAIVQSIIHIRTRWELSQPDSIPQHTKIRPKDVPGTLLNIALL Variant 6NLGSSDPSLRSAAYNLLCALTCTFNLKIEGQLLETSGLCIPANNTLFI SEQ ID NO: 32VSISKTLAANEPHLTLEFLEECISGFSKSSIELKHLCLEYMTPWLSNLVRFCKHNDDAKRQRVTAILDKLITMTINEKQMYPSIQAKIWGSLGQITDLLDVVLDSFIKTSATGGLGSIKAEVMADTAVALASGNVKLVS SK Neurofibromin 1MKRCWSNSCCQKSAIFFTPVVKETSMQLNFGILPLGFYFLSAATTS Variant 7MQSLVAFLPETAFKFKALKKVAQLAVINSLEKAFWNWVENYPDE SEQ ID NO: 33FTKLYQIPQTDMAECAEKLFDLVDGFAESTKRKAAVWPLQIILLILCPEIIQDISKDVVDENNMNKVRRAKLFPLYLDVKQFILLKVCITLGLLFKQSISGNHLNDHFRFLCLMDLEETYSYIILFGRGKIIPGNEQRFKII P Neurofibromin 1XIHGIVQSVVYHEESPPQYQTSYLQSFGFNGLWRFAGPFSKQTQIP Variant 8DYAELIVKFLDALIDTYLPGIDEETSEESLLTPTSPYPPALQSQLSITA SEQ ID NO: 34NLNLSNSMTSLATSQHSPGQ Glyceraldehyde-3 phosphateMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPSKIKW dehydrogenaseGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFV Variant 2MGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTV SEQ ID NO: 35HAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWY DNEFGYSNRVVDLMAHMASKEGlyceraldehyde-3 phosphate MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYdehydrogenase MFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPSKIKWGDA Variant 3GAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMG SEQ ID NO: 36VNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDN EFGYSNRVVDLMAHMASKEGlyceraldehyde-3 phosphate MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYdehydrogenase MFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPSKIKWGDA Variant 4GAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMG SEQ ID NO: 37VNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDN EFGYSNRVVDLMAHMASKEGlyceraldehyde-3 phosphate MEEMRDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRdehydrogenase VIISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIH Variant 5DNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPAST SEQ ID NO: 38GAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE Glyceraldehyde-3 phosphateMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPSKIKW dehydrogenaseGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFV Variant 6MGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTV SEQ ID NO: 39HAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWY DNEFGYSNRVVDLMAHMASKEFibronectin Type III DomainXPRHVKLLSTKMGLKVTWDPPKDATSRPVEHYNIAYGKSLKSLKY Containing protein 1IKVNAETYSFLIEDVEPGVVYFVLLTAENHSGVSRPVYRAESPPGG Variant 2EWIEIDGFPIKGPGPFNETVTEKEVPNKPLRVRVRSSDDRLSVAWK SEQ ID NO: 40APRLSGAKSPRRSRGFLLGYGESGRKMNYVPLTRDERTHEIKKLASESVYVVSLQSMNSQGRSQPVYRAALTKRKISEEDELDVPDDISVRVMSSQSVLVSWVDPVLEKQKKVVASRQYTVRYREKGELARWDYKQIANRRVLIENLIPDTVYEFAVRISQGERDGKWSTSVFQRTPESAPTTAPENLNVWPVNGKPTVVAASWDALPETEGKVKASKADVEQNTEDNGKPEKPEPSSPSPRAPASSQHPSVPASPQGRNAKDLLLDLKNKILANGGAPRKPQLRAKKAEELDLQSTEITGEEELGSREDSPMSPSDTQDQKRTLRPPSRHGHSVVAPGRTAVRARMPALPRREGVDKPGFSLATQPRPGAPPSASASPAHHASTQGTSHRPSLPASLNDNDLVDSDEDERAVGSLHPKGAFAQPRPALSPSRQSPSSVLRDRSSVHPGAKPASPARRTPHSGAAEEDSSASAPPSRLSPPHGGSSRLLPTQPHLSSPLSKGGKDGEDAPATNSNAPSRSTMSSSVSSHLSSRTQVSEGAEASDGESHGDGDREDGGRQAEATAQTLRARPASGHFHLLRHKPFAANGRSPSRFSIGRGPRLQPSSSPQSTVPSRAHPRVPSHSDSHPKLSSGIHGDEEDEKPLPATVVNDHVPSSSRQPISRGWEDLRRSPQRGASLHRKEPIPENPKSTGADTHPQGKYSSLASKAQDVQQSTDADTEGHSPKAQPGSTDRHASPARPPAARSQQHPSVPRRMTPGRAPQQQPPPPVATSQHHPGPQSRDAGRSPSQPRLSLTQAGRPRPTSQGRSHSSSDPYTASSRGMLPTALQNQDEDAQGSYDDDSTEVEAQDVRAPAHAARAKEAAASLPKHQQVESPTGAGAGGDHRSQRGHAASPARPSRPGGPQSRARVPSRAAPGKSEPPSKRPLSSKSQQSVSAEDDEEEDAGFFKGGKEDLLSSSVPKWPSSSTPRGGKDADGSLAKEEREPAIALAPRGGSLAPVKRPLPPPPGSSPRASHVPSRLPPRSAATVSPVAGTHPWPQYTTRAPPGHFSTTPMLSLRQRMMHARFRNPLSRQPARPSYRQGYNGRPNVEGKVLPGSNGKPNGQRIINGPQGTKWVVDLDRGLVLNAEGRYLQDSHGNPLRIKLGGDGRTIVDLEGTPVVSPDGLPLFGQGRHGTPLANAQDKPILSLGGKPLVGLEVIKKTTHPPTTTMQPTTTTTPLPTTTTPRPTTATTRRTTTTRRTTTRRPTTTVRTTTRTTTTTTPTPTTPIPTCPPGTLERHDDDGNLIMSSNGIPECYAEEDEFSGLETDTAVPTEEAYVIYDEDYEFETSRPPTTTEPSTTATTPRVIPEEGAISSFPEEEFDLAGRKRFVAPYVTYLNKDPSAPCSLTDALDHFQVDSLDEIIPNDLKKSDLPPQHAPRNITVVAVEGCHSFVIVDWDKATPGDVVTGYLVYSASYEDFIRNKWSTQASSVTHLPIENLKPNTRYYFKVQAQNPHGYGPISPSVSFVTESDNPLLVVRPPGGEPIWIPFAFKHDPSYTDCHGRQYVKRTWYRKFVGVVLCNSLRYKIYLSDNLKDTFYSIGDSWGRGEDHCQFVDSHLDGRTGPQSYVEALPTIQGYYRQYRQEPVRFGNIGFGTPYYYVGWYECGVSIPG KWEukaryotic initiation factor 4A-IMSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLR Variant 2GIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ SEQ ID NO: 41IELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLGKLYPQNRSRWTVWP Eukaryotic initiation factor 4A-IMSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLR Variant 3GIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ SEQ ID NO: 42IELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFR SGSSRVLITTDLLNRSRWTVWPEukaryotic initiation factor 4A-IMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAI Variant 4LPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTR SEQ ID NO: 43ELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTIT Eukaryotic initiation factor 4A-IXVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGR Variant 5VFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSN SEQ ID NO: 44TQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLGKLYPQNRSRW TVWPEukaryotic initiation factor 4A-IMSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLR Variant 6GIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ SEQ ID NO: 45IELDLKATQALVLAPTRELAQQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM Eukaryotic initiation factor 4A-IMSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLR Variant 7GIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ SEQ ID NO: 46IELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAEukaryotic initiation factor 4A-IMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAI Variant 8LPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKAT SEQ ID NO: 47Eukaryotic initiation factor 4A-IXAWAHCARGRHRPRPPTSGSRDNGPDGMEPEGVIESNWNEIVDSF Variant 9DDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTG SEQ ID NO: 48KTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKL Eukaryotic initiation factor 4A-IMSASQDSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGI Variant 10YAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE SEQ ID NO: 49LDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEA DEMLSEukaryotic initiation factor 4A-IMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKT Variant 11ATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG SEQ ID NO: 50ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSP KYIKMFVLDEADEMLSRGFKDQIYDIEukaryotic initiation factor 4A-IMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKT Variant 12ATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG SEQ ID NO: 51ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYEukaryotic initiation factor 4A-IMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLE Variant 13VTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYE SEQ ID NO: 52TLTITQAVIFINTRRKVDWLTEKMHA Eukaryotic initiation factor 4A-IMGRSTFLRGSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLL Variant 14RGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTA SEQ ID NO: 53L-lactate dehydrogenase chain BMATLKEKLIAPVAEEEATVPNNKITVVGVGQVGMACAISILGKSLA Variant 2DELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANS SEQ ID NO: 54KIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLK KSADTLWDIQKDLKDLL-lactate dehydrogenase chain BMATLKEKLIAPVAEEEATVPNNKITVVGVGQVGMACAISILGKSLA Variant 3DELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANS SEQ ID NO: 55KIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLK KSADTLWDIQKDLKDLXLVSSRLL-lactate dehydrogenase chain BMATLKEKLIAPVAEEEATVPNNKITVVGVGQVGMACAISILGKSLA Variant 4DELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANS SEQ ID NO: 56KIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSEN WKEVHL-lactate dehydrogenase chain BMATLKEKLIAPVAEEEATVPNNKITVVGVGQVGMACAISILGKSLA Variant 5DELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANS SEQ ID NO: 57KIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVL-lactate dehydrogenase chain BMATLKEKLIAPVAEEEATVPNNKITVVGVGQVGMACAISILGKSLA Variant 6DELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANS SEQ ID NO: 58 KIVVVTAGVRQQNuclear heterogeneous MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRibonucleoprotein A1 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVVariant 2 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM SEQ ID NO: 59TDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSY GSGRRFNuclear heterogeneous MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRibonucleoprotein A1 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVVariant 3 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM SEQ ID NO: 60TDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF Nuclear heterogeneousMSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVM Ribonucleoprotein A1RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV Variant 4SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM SEQ ID NO: 61TDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGIGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF Nuclear heterogeneousKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNC Ribonucleoprotein A1EVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRG Variant 5GNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDF SEQ ID NO: 62GNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYG GSSSSSSYGSGRRFNuclear heterogeneous MRDSLLVAKFLGTQDLCLFLNLALSPKEPEQLRKLFIGGLSFETTDERibonucleoprotein A1 SLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMVariant 6 NARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTE SEQ ID NO: 63EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRG GGFGG Nuclear heterogeneousMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR Ribonucleoprotein A1AVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI Variant 7EIMTDRGSGKKRGFAFVTFDDHDS SEQ ID NO: 64 Nuclear heterogeneousMSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVM Ribonucleoprotein A1RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV Variant 8SREDSQRPGAHLTVKKIFVGGFGGSRGGGGYGGSGDGYNGFGND SEQ ID NO: 65GSNFGGGGSYNDFGNYNNQSSN Nuclear heterogeneousMSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVDS Ribonucleoprotein A1QRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG Variant 9SGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE SEQ ID NO: 66 MASASSSQRPolycystic kidney disease proteinXSRLRASMWIDRSTRAVSVHFTLYNPPTQLFTSVSLRVEILPTGSLV 1-like 1PSSLVESFSIFRSDSALQYHLMLPQLVFLALSLIHLCVQLYRMMDK Variant 2GVLSYWRKPRNWLELSVVGVSLTYYAVSGHLVTLAGDVTNQFHR SEQ ID NO: 67GLCRAFMDLTLMASWNQRARWLRGILLFLFTLKCVYLPGIQNTMASCSSMMRHSLPSIFVAGLVGALMLAALSHLHRFLLSMWVLPPGTFTDAFPGLLFHFPRRSQKDCLLGLSKSDQRAMACYFGILLIVSATLCFGMLRGFLMTLPQKRKSFQSKSFVRLKDVTAYMWEKVLTFLRLETPKLEEAEMVENHNYYLDEFANLLDELLMKINGLSDSLQLPLLEKTSNNTGEARTEESPLVDISSYQAAESLTLVTQTEVQWHDLGSLQPPHPRFKQFSCLSLPSSWDYRRVPLCLANF Polycystic kidney disease proteinXVGGPENPYLIDPENQNVTLNGPGGCGTREDCVLSLGRTRTEAHT 1-like 1ALSRLRASMWIDRSTRAVSVHFTLYNPPTQLFTSVSLRVEILPTGSL Variant 3VPSSLVESFSIFRSDSALQYHLMLPQLVFLALSLIHLCVQLYRMMD SEQ ID NO: 68KGVLSYWRKPRNWLEVASLVSFSFEK Heat shock protein cognate 71 kDaMSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT Variant 2DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKH SEQ ID NO: 69WPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASS GPTIEEVDHeat shock protein cognate 71 kDaMSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT Variant 3DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKH SEQ ID NO: 70WPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASS GPTIEEVDHeat shock protein cognate 71 kDaMSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT Variant 4DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKH SEQ ID NO: 71WPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD Heat shock protein cognate 71 kDaMSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT Variant 5DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKH SEQ ID NO: 72WPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD Heat shock protein cognate 71 kDaMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASI Variant 6EIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKS SEQ ID NO: 73QIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVDHeat shock protein cognate 71 kDaMSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT Variant 7DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKH SEQ ID NO: 74WPFMVVNDAGRPKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVDHeat shock protein cognate 71 kDaMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKV Variant 8QVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPA SEQ ID NO: 75YFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGHeat shock protein cognate 71 kDaMSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT Variant 9DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKH SEQ ID NO: 76WPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTA AAIAYGLDKHeat shock protein cognate 71 kDaMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNL Variant 10LGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITI SEQ ID NO: 77TNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPHeat shock protein cognate 71 kDaMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKST Variant 11GKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKN SEQ ID NO: 78SLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQ TAEKEEFEHQQKEHeat shock protein cognate 71 kDaMSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT Variant 12DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKH SEQ ID NO: 79WPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLR Heat shock protein cognate 71 kDaMSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT Variant 13DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKH SEQ ID NO: 80WPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEHeat shock protein cognate 71 kDaMSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT Variant 14DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKH SEQ ID NO: 81WPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTA AAIAYHeat shock protein cognate 71 kDaMSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT Variant 15DTERLIGDAAKNQVAMNPTNTVFETKSFYPEEVSSMVLTKMKEIA SEQ ID NO: 82EAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSI Heat shock protein cognate 71 kDaMSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT Variant 16DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKH SEQ ID NO: 83WPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAHeat shock protein cognate 71 kDaMSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT Variant 17DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKH SEQ ID NO: 84WPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEA YLGK Ankyrin-3MASSASSSPAGTEDSAPAQGGFGSDYSRSSRKSDANASYLRAARA Variant 2GHLEKALDYIKNGVDINICNQNGLNALHLASKEGHVEVVSELLQR SEQ ID NO: 85EANVDAATKKGNTALHIASLAGQAEVVKVLVTNGANVNAQSQNGFTPLYMAAQENHLEVVKFLLDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPALHIAARKDDTKAAALLLQNDNNADVESKSGFTPLHIAAHYGNINVATLLLNRAAAVDFTARNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRAAPILSKTKNGLSPLHMATQGDHLNCVQLLLQHNVPVDDVTNDYLTALHVAAHCGHYKVAKVLLDKKANPNAKALNGFTPLHIACKKNRIKVMELLLKHGASIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLVQDGAQVEAKAKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLSAREGHEDVAAFLLDHGASLSITTKKGFTPLHVAAKYGKLEVANLLLQKSASPDAAGKSGLTPLHVAAHYDNQKVALLLLDQGASPHAAAKNGYTPLHIAAKKNQMDIATTLLEYGADANAVTRQGIASVHLAAQEGHVDMVSLLLGRNANVNLSNKSGLTPLHLAAQEDRVNVAEVLVNQGAHVDAQTKMGYTPLHVGCHYGNIKIVNFLLQHSAKVNAKTKNGYTPLHQAAQQGHTHIINVLLQNNASPNELTVNGNTALGIARRLGYISVVDTLKIVTEETMTTTTVTEKHKMNVPETMNEVLDMSDDEVRKANAPEMLSDGEYISDVEEGEDAMTGDTDKYLGPQDLKELGDDSLPAEGYMGFSLGARSASLRSFSSDRSYTLNRSSYARDSMMIEELLVPSKEQHLTFTREFDSDSLRHYSWAADTLDNVNLVSSPIHSGFLVSFMVDARGGSMRGSRHHGMRIIIPPRKCTAPTRITCRLVKRHKLANPPPMVEGEGLASRLVEMGPAGAQFLGPVIVEIPHFGSMRGKERELIVLRSENGETWKEHQFDSKNEDLTELLNGMDEELDSPEELGKKRICRIITKDFPQYFAVVSRIKQESNQIGPEGGILSSTTVPLVQASFPEGALTKRIRVGLQAQPVPDEIVKKILGNKATFSPIVTVEPRRRKFHKPITMTIPVPPPSGEGVSNGYKGDTTPNLRLLCSITGGTSPAQWEDITGTTPLTFIKDCVSFTTNVSARFWLADCHQVLETVGLATQLYRELICVPYMAKFVVFAKMNDPVESSLRCFCMTDDKVDKTLEQQENFEEVARSKDIEVLEGKPIYVDCYGNLAPLTKGGQQLVFNFYSFKENRLPFSIKIRDTSQEPCGRLSFLKEPKTTKGLPQTAVCNLNITLPAHKKIEKTDRRQSFASLALRKRYSYLIEPGMSPQSPCERTDIRMAIVADHLGLSWTELARELNFSVDEINQIRVENPNSLISQSFMLLKKWVTRDGKNATTDALTSVLTKINRIDIVTLLEGPIFDYGNISGTRSFADENNVFHDPVDGYPSLQVELETPTGLHYTPPTPFQQDDYFSDISSIESPLRTPSRLSDGLVPSQGNIEHSADGPPVVTAEDASLEDSKLEDSVPLTEMPEAVDVDESQLENVCLSWQNETSSGNLESCAQARRVTGGLLDRLDDSPDQCRDSITSYLKGEAGKFEANGSHIEITPEAKTKSYFPESQNDVGKQSTKETLKPKIHGSGHVEEPASPLAAYQKSLEETSKLIIEETKPCVPVSMKKMSRTSPADGKPRLSLHEEEGSSGSEQKQGEGFKVKTKKEIRHVEKKSHS Ankyrin-3MSEEPKEKNAKPAHRKRKGKKSDANASYLRAARAGHLEKALDYI Variant 3KNGVDINICNQNGLNALHLASKEGHVEVVSELLQREANVDAATK SEQ ID NO: 86KGNTALHIASLAGQAEVVKVLVTNGANVNAQSQNGFTPLYMAAQENHLEVVKFLLDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPALHIAARKDDTKAAALLLQNDNNADVESKSGFTPLHIAAHYGNINVATLLLNRAAAVDFTARNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRAAPILSKTKNGLSPLHMATQGDHLNCVQLLLQHNVPVDDVTNDYLTALHVAAHCGHYKVAKVLLDKKANPNAKALNGFTPLHIACKKNRIKVMELLLKHGASIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLVQDGAQVEAKAKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLSAREGHEDVAAFLLDHGASLSITTKKGFTPLHVAAKYGKLEVANLLLQKSASPDAAGKSGLTPLHVAAHYDNQKVALLLLDQGASPHAAAKNGYTPLHIAAKKNQMDIATTLLEYGADANAVTRQGIASVHLAAQEGHVDMVSLLLGRNANVNLSNKSGLTPLHLAAQEDRVNVAEVLVNQGAHVDAQTKMGYTPLHVGCHYGNIKIVNFLLQHSAKVNAKTKNGYTPLHQAAQQGHTHIINVLLQNNASPNELTVNGNTALGIARRLGYISVVDTLKIVTEETMTTTTVTEKHKMNVPETMNEVLDMSDDEVRKANAPEMLSDGEYISDVEEGNRCTWYKIPKVQEFTVKSEDAMTGDTDKYLGPQDLKELGDDSLPAEGYMGFSLGARSASLRSFSSDRSYTLNRSSYARDSMMIEELLVPSKEQHLTFTREFDSDSLRHYSWAADTLDNVNLVSSPIHSGFLVSFMVDARGGSMRGSRHHGMRIIIPPRKCTAPTRITCRLVKRHKLANPPPMVEGEGLASRLVEMGPAGAQFLGPVIVEIPHFGSMRGKERELIVLRSENGETWKEHQFDSKNEDLTELLNGMDEELDSPEELGKKRICRIITKDFPQYFAVVSRIKQESNQIGPEGGILSSTTVPLVQASFPEGALTKRIRVGLQAQPVPDEIVKKILGNKATFSPIVTVEPRRRKFHKPITMTIPVPPPSGEGVSNGYKGDTTPNLRLLCSITGGTSPAQWEDITGTTPLTFIKDCVSFTTNVSARFWLADCHQVLETVGLATQLYRELICVPYMAKFVVFAKMNDPVESSLRCFCMTDDKVDKTLEQQENFEEVARSKDIEVLEGKPIYVDCYGNLAPLTKGGQQLVFNFYSFKENRLPFSIKIRDTSQEPCGRLSFLKEPKTTKGLPQTAVCNLNITLPAHKKIEKTDRRQSFASLALRKRYSYLTEPGMSPQSPCERTDIRMAIVADHLGLSWIELARELNFSVDEINQIRVENPNSLISQSFMLLKKWVTRDGKNATTDALTSVLTKINRIDIVTLLEGPIFDYGNISGTRSFADENNVFHDPVDGYPSLQVELETPTGLHYTPPTPFQQDDYFSDISSIESPLRTPSRLSDGLVPSQGNIEHSADGPPVVTAEDASLEDSKLEDSVPLTEMPEAVDVDESQLENVCLSWQNETSSGNLESCAQARRVTGGLLDRLDDSPDQCRDSITSYLKGEAGKFEANGSHTEITPEAKTKSYFPESQNDVGKQSTKETLKPKIHGSGHVEEPASPLAAYQKSLEETSKLIIEETKPCVPVSMKKMSRTSPADGKPRLSLHEEEGSSGSEQKQGEGFKVKTKKEIRHV EKKSHS Ankyrin-3MALPQSEDAMTGDTDKYLGPQDLKELGDDSLPAEGYMGFSLGAR Variant 4SASLRSFSSDRSYTLNRSSYARDSMMEEELLVPSKEQHLTFTREFDS SEQ ID NO: 87DSLRHYSWAADTLDNVNLVSSPIHSGFLVSFMVDARGGSMRGSRHHGMRIIIPPRKCTAPTRITCRLVKRHKLANPPPMVEGEGLASRLVEMGPAGAQFLGPVIVEIPHFGSMRGKERELIVLRSENGETWKEHQFDSKNEDLTELLNGMDEELDSPEELGKKRICRIITKDFPQYFAVVSRIKQESNQIGPEGGILSSTTVPLVQASFPEGALTKRIRVGLQAQPVPDEIVKKILGNKATFSPIVTVEPRRRKFHKPITMTIPVPPPSGEGVSNGYKGDTTPNLRLLCSITGGTSPAQWEDITGTTPLTFIKDCVSFTTNVSARFWLADCHQVLETVGLATQLYRELICVPYMAKFVVFAKMNDPVESSLRCFCMTDDKVDKTLEQQENFEEVARSKDIEVLEGKPIYVDCYGNLAPLTKGGQQLVFNFYSFKENRLPFSIKIRDTSQEPCGRLSFLKEPKTTKGLPQTAVCNLNITLPAHKKIEKTDRRQSFASLALRKRYSYLTEPGMSPQSPCERTDIRMAIVADHLGLSWIELARELNFSVDEINQIRVENPNSLISQSFMLLKKWVTRDGKNATTDALTSVLTKINRIDIVTLLEGPIFDYGNISGTRSFADENNVFHDPVDGYPSLQVELETPTGLHYTPPTPFQQDDYFSDISSIESPLRTPSRLSDGLVPSQGNIEHSADGPPVVTAEDASLEDSKLEDSVPLTEMPEAVDVDESQLENVCLSWQNETSSGNLESCAQARRVTGGLLDRLDDSPDQCRDSITSYLKGEAGKFEANGSHTEITPEAKTKSYFPESQNDVGKQSTKETLKPKIHGSGHVEEPASPLAAYQKSLEETSKLIIEETKPCVPVSMKKMSRTSPADGKPRLSLHEEEGSSGSEQKQGEGFKVKTKKEIRHVEKKSHS Ankyrin-3XFLVSFMVDARGGSMRGSRHHGMRIIIPPRKCTAPTRITCRLVKRH Variant 5KLANPPPMVEGEGLASRLVEMGPAGAQFLGPVIVEIPHFGSMRGK SEQ ID NO: 88ERELIVLRSENGETWKEHQFDSKNEDLTELLNGMDEELDSPEELGKKRICRIITKDFPQYFAVVSRIKQESNQIGPEGGILSSTTVPLVQASFPEGALTKRIRVGLQAQPVPDEIVKKILGNKATFSPIVTVEPRRRKFHKPITMTIPVPPPSGEGVSNGYKGDTTPNLRLLCSITGGTSPAQWEDITGTTPLTFIKDCVSFTTNVSARFWLADCHQVLETVGLATQLYRELICVPYMAKFVVFAKMNDPVESSLRCFCMTDDKVDKTLEQQENFEEVARSKDIEVLEGKPIYVDCYGNLAPLTKGGQQLVFNFYSFKENRLPFSIKIRDTSQEPCGRLSFLKEPKTTKGLPQTAVCNLNITLPAHKKIEKTDRRQSFASLALRKRYSYLTEPGMKTVERSTGATRSLPTTYSYKPFFSTRPYQSWTTAPITVPGPAKSGFTSLSSSSSNTPSASPLKSIWSVSTPSPIKSTLGASTTSSVKSISDVASPIRSFRTMSSPIKTVVSQSPYNIQVSSGTLARAPAVTEATPLKGLASNSTFSSRTSPVTTAGSLLERSSITMTPPASPKSNINMYSSSLPFKSIITSAAPLISSPLKSVVSPVKSAVDVISSAKITMASSLSSPVKQMPGHAEVALVNGSISPLKYPSSSTLINGCKATATLQEKISSATNSVSSVVSAATDTVEKVFSTTTAMPFSPLRSYVSAAPSAFQSLRTPSASALYTSLGSSISATTSSVTSSIITVPVYSVVNVLPEPALKKLPDSNSFTKSAAALLSPIKTLTTETHPQPHFSRTSSPVKSSLFLAPSALKLSTPSSLSSSQEILKDVAEMKEDLMRMTAILQTDVPEEKPFQPELPKEGRIDDEEPFKIVEKVKEDLVKVSEILKKDVCVDNKGSPKSPKSDKGHSPEDDWIEFSSEEIREARQQAAASQSPSLPERVQVKAKAASEKDYNLTKVIDYLTNDIGSSSLTNLKYKFEDAKKDGEERQKRVLKPAIALQEHKLKMPPASMRTSTSEKELCKMADSFFGTDTILESPDDFSQHDQDKSPLSDSGFETRSEKTPSAPQSAESTGPKPLFHEVPIPPVITETRIEVVHVIRSYDPSAGDVPQTQPEEPVSPKPSPTFMELEPKPTTSSIKEKVKAFQMKASSEEDDHNRVLSKGMRVKEETHITTTTRMVYHSPPGGEGASERIEETMSVHDIMKAFQSGRDPSKELAGLFEHKSAVSPDVHKSAAETSAQHAEKDNQMKPKLERIIEVHIEKGPQSPCERTDIRMAIVADHLGLSWTELARELNFSVDEINQIRVENPNSLISQSFMLLKKWVTRDGKNATTDALTSVLTKINRIDIVTLLEGPIFDYGNISGTRSFADENNVFHDPVDGWQNETSSGNLESCAQARRVTGGLLDRLDDSPDQCRDSITSYLKGEAGKFEANGSHTEITPEAKTKSYFPESQNDVGKQSTKETLKPKIHGSGHVEEPASPLAAYQKSLEETSKLIIEETKPCVPVSMKKMSRTSPADGKPRLSLHEEEGSSGSEQKQGEGFKVKTKKE IRHVEKKSHS Ankyrin-3XPVIVEIPHFGSMRGKERELIVLRSENGETWKEHQFDSKNEDLILL Variant 6LNGMDEELDSPEELGKKRICRIITKDFPQYFAVVSRIKQESNQIGPE SEQ ID NO: 89GGILSSTTVPLVQASFPEGALTKRIRVGLQAQPVPDEIVKKILGNKATFSPIVTVEPRRRKFHKPITMTIPVPPPSGEGVSNGYKGDTTPNLRLLCSITGGTSPAQWEDITGTTPLTFIKDCVSFTTNVSARFWLADCHQVLETVGLATQLYRELICVPYMAKFVVFAKMNDPVESSLRCFCMTDDKVDKTLEQQENFEEVARSKDIEVLEGKPIYVDCYGNLAPLTKGGQQLVFNFYSFKENRLPFSIKIRDTSQEPCGRLSFLKEPKTTKGLPQTAVCNLNITLPAHKKETESDQDDEIEKTDRRQSFASLALRPQSPCERTDIRMAIVADHLGLSWTELARELNFSVDEINQIRVENPNSLISQSFMLLKKWVTRDGKNATTDALTSVLTKINRIDIVTLLEGPIFDYGNISGTRSFADENNVFHDPVDGYPSLQVELETPTGLHYTPPTPFQQDDYFSDISSIESPLRTPSRLSDGLVPSQGNIEHSADGPPVVTAEDASLEDSKLEDSVPLTEMPEAVDVDESQLENVCLSEYPQYLGNLAGSPKDVKPAEPRKLGVSSEQQEKGKSGPDEEMMEEKLKSLFEDIQLEEGVESEEMTEEKVQAILKRVQQAELEMSSITGWQNETSSGNLESCAQARRVTGGLLDRLDDSPDQCRDSITSYLKGEAGKFEANGSHTETTPEAKTKSYFPESQNDVGKQSTKETLKPKIHGSGHVEEPASPLAAYQKSLEETSKLIIEETKPCVPVSMKKMSRTSPADGKPRLSLHEEEGSSGSEQKDLKDSESDSSSEEERRVTTRVIRRRLIIKGEEAKNIPGESVTEEQFTDEEGNLITRKITRKVLRRIVIPQERKRDDVQGEGFKVKTKKEIRHVEKKSHS Ankyrin-3PKTTKGLPQTAVCNLNITLPAHKKETESDQDDEIEKTDRRQSFASL Variant 7ALRKRYSYLTEPGMSPQSPCERTDIRMAIVADHLGLSWTELARELN SEQ ID NO: 90FSVDEINQIRVENPNSLISQSFMLLKKWVTRDGKNATTDALTSVLTKINRIDIVTLLEGPIFDYGNISGTRSFADENNVFHDPVDGYPSLQVELETPTGLHYTPPTPFQQDDYFSDISSIESPLRTPSRLSDGLVPSQGNIEHSADGPPVVTAEDASLEDSKLEDSVPLTEMPEAVDVDESQLENVCLSWQNETSSGNLESCAQARRVTGGLLDRLDDSPDQCRDSITSYLKGEAGKFEANGSHTEITPEAKTKSYFPESQNDVGKQSTKETLKPKIHGSGHVEEPASPLAAYQKSLEETSKLIIEETKPCVPVSMKKMSRTSPADGKPRLSLHEEEGSSGSEQKQGEGFKVKTKKEIRHVEKKSHS Ankyrin-3XLARELNFSVDEINQIRVENPNSLISQSFMLLKKWVTRDGKNATTD Variant 8ALTSVLTKINRIDIVTLLEGPIFDYGNISGTRSFADENNVFHDPVDG SEQ ID NO: 91 NRIAnkyrin-3 XGPDEDKPPSKSSSSEKTPDKTDQKSGAQFFTLEGRHPDRSVFPDT Variant 9YFSYKVDEEFATPFKTVATKGLDFDPWSNNRGDDEVFDSKSREDE SEQ ID NO: 92TKPFGLAVEDRSPATTPDTTPARTPTDESTPTSEPNPFPFHEGKMFEMTRSGAIDMSKRDFVEERLQFFQIGPQSPCERTDIRMAIVADHLGLSWTELARELNFSVDEINQIRVENPNSLISQSFMLLKKWVTRDGKNATTDALTSVLTKINRIDIVTLLEGPIFDYGNISGTRSFADENNVFHDPVDGWQNETSSGNLESCAQARRVTGGLLDRLDDSPDQCRDSITSYL Ankyrin-3MAVEEGESFPEQSDANASYLRAARAGHLEKALDYIKNGVDINICN Variant 10QNGLNALHLASKEGHVEVVSELLQREANVDAATKKGNTALHIAS SEQ ID NO: 93LAGQAEVVKVLVTNGANVNAQSQNGFTPLYMAAQENHLEVVKFLLDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPALHIAARKDDTKAAALLLQNDNNADVESKSGFTPLHIAAHYGNINVATLLLNRAAAVDFTARNDITPLHVASKRGNANMVKLLLDRGA KIDAKTR Ankyrin-3MAVEEGESFPEQSDANASYLRAARAGHLEKALDYIKNGVDINICN Variant 11QNGLNALHLASKEGHVEVVSELLQREANVDAATKKGNTALHIAS SEQ ID NO: 94LAGQAEVVKVLVTNGANVNAQSQNGFTPLYMAAQENHLEVVKFLLDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPALHIAARKDDTKAAALLLQNDNNADVESKSGFTPLHIAAHYGNINVATLLLNRAAAVDFTARNDITPLHVASKRGNANMVKLLLDRGA KIDAKTR Ankyrin-3XTVATKGLDFDPWSNNRGDDEVFDSKSREDETKPFGLAVEDRSPA Variant 12TTPDTTPARTPTDESTPTSEPNPFPFHEGKMFEMTRSGAIDMSKRDF SEQ ID NO: 95VEERLQFFQIGPQSPCERTDIRMAIVADHLGLSWTELARELNFSVDEINQIRVENPNSLISQSFMLLKKWVTRDGKNATTDALTSVLTKINRIDIVTLLEGPIFDYGNISGTRSFADENNVFHDPVDGYPSLQVELETPT GLHYTPPTP Ankyrin-3XWQNETSSGNLESCAQARRVTGGLLDRLDDSPDQCRDSITSYLKG Variant 13EAGKFEANGSHTEITPEAKTKSYFPESQNDVGKQSTKETLKPKIHG SEQ ID NO: 96SGHVEEPASPLAAYQKSLEETSKLIIEETKPCVPVSMKKMSRTSPADGKPRLSLHEEEGSSGSEQKGEGFKVKTKKEIRHVEKKSHS Ankyrin-3MNVPETMNEVLDMSDDEGNRCTWYKIPKVQEFTVKSEDAMTGD Variant 14TDKYLGPQDLKELGDDSLPAEGYMGFSLGARSARYFVVAVFHS SEQ ID NO: 97 Ankyrin-3MTGDTDKYLGPQDLKELGDDSLPAEGYMGFSLGARSASLRSFSSD Variant 15RSYTLNRSSYARDSMMIEELLVPSKEQHLTFTREFDSDSLRHYSWA SEQ ID NO: 98ADTLDNVNLVSSPIHSGFLVSFMVDARGGSMRGSRHHGMRIIIPPRKCTAPTRITCRLVKRHKLANPPPMVEGEGLASRLVEMGPAGAQFL GPVIVEIPHFGSM Ankyrin-3SPDQCRDSITSYLKGEAGKFEANGSHTEITPEAKTKSYFPESQNDV Variant 16GKQSTKETLKPKIHGSGHVEEPASPLAAYQKSLEETSKLIIEETKPC SEQ ID NO: 99VPVSMKKMSRTSPADGKPRLSLHEEEGSSGSEQKVKSPGAAPTRMTACCYKQGEGFKVKTKKEIRHVEKKSHS Ankyrin-3XLARELNFSVDEINQIRVENPNSLISQSFMLLKKWVTRDGKNATTD Variant 17ALTSVLTKINRIDIVTLLEGPIFDYGNISGTRSFADENNVFHDPVDVS SEQ ID NO: 100PNVLSSIGYPSLQVELETPTGLHYTPPTPFQQDDYFSDISSIESPLRTPSRLSDGLVPSQGNIEHSADGPPVVTAEDASLEDSKLEDSVPLTEMPEAVDVDESQLENVCLSWQNETSSGNLES Ankyrin-3XEDAMTGDTDKYLGPQDLKELGDDSLPAEGYMGFSLGARSASPKI Variant 18SLRSFSSDRSYTLNRSSYARDSMMIEELLVPSKEQHLTFTREFDSDS SEQ ID NO: 101LRHYSWAADTLDNVNLVSSPIHSGYSSPLPQYDSRFLVSFMVDARGGSMRGSRHHGMRIIIPPRKCTAPTRITCRLVKRHKLANPPPMVEG EGLASRLVEMGPAGAQFLAnkyrin-3 XSSPIHSGFLVSFMVDARGGSMRGSRHHGMRIIIPPRKCTAPTRITC Variant 19RLVKRHKLANPPPMVEGEGLASRLVEMGPAGAQFLGKLHLPTNPP SEQ ID NO: 102PVNEGESLVSRILQLGPQGTKFIGPVIVEIPHFGSMRGKERELIVLRSENGETWKEHQFDSKNEDLTELLNGMDEELDSPEELGKKRICRIITK DFPQYFAVVS Ankyrin-3MTGDTDKYLGPQDLKELGDDSLPAEGYMGFSLGARSASLRSFSSD Variant 20RSYTLNRSSYARDSMMIEELLVPSKEQ SEQ ID NO: 103 Ankyrin-3XIEKTDRRQSFASLALRKRYSYLIEPGMSPQSPCERTDIRMAIVAD Variant 21HLGLSWTELARELNFSVDEINQIRVENPNSLISQSFMLLKKWVTRD SEQ ID NO: 104GKNATTDALTSVLTKINRIDIVTLLEGPIFDYGNISGTRSFADENNVFHDPVDDGPPVVTAEDASLEDSKLEDSVPLTEMPEAVDVDESQLE NVC Ankyrin-3XSPLAAYQKSLEETSKLIIEETKPCVPVSMKKMSRTSPADGKPRLSL Variant 22HEEEGSSGSEQKVKSPGAAPTRMTACCYKDLKDSESDSSSEEERR SEQ ID NO: 105VTTRVIRRRLIIKGEEAKNIPGESVTEEQFTDEEGNLITRKITRKVLRRIVIPQERKRDDVQGEGFKVKTKKEIRHVEKKSHS Ankyrin-3MTGDTDKYLGPQDLKELGDDSLPAEGYMGFSLGARSASLRSFSSD Variant 23RSYTLNRSSYARDSMMIEELLVPSKEQHLTFTREFDSDSLRHYSWA SEQ ID NO: 106ADTLDNVNLVSSPIHSGFLVSFMVDARGGSMRGSRHHGMRIIIPPR KCTAPTRITCRLVKRHKLANPPAnkyrin-3 MTGDTDKYLGPQDLKELGDDSLPAEGYMGFSLGARSASHAASTV Variant 24AKELTDKTGRTNLSHIFQN SEQ ID NO: 107 Rho GTPase-activating protein 32MKSRPTKQKLKQRGILKERVFGCDLGEHLLNSGFEVPQVLQSCTA Variant 2FIERYGIVDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHS SEQ ID NO: 108VGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNHVDVLFSGRISMAMQEGAASLSRPKSLLVSSPSTKLLTLEEAQARTQAQVNSPIVTENKYIEVGEGPAALQGKFHTIIEFPLERKRPQNKMKKSPVGSWRSFFNLGKSSSVSKRKLQRNESEPSEMKAMALKGGRAEGTLRSAKSEESLTSLHAVDGDSKLFRPRRPRSSSDALSASFNGEMLGNRCNSYDNLPHDNESEEEGGLLHIPALMSPHSAEDVDLSPPDIGVASLDFDPMSFQCSPPKAESECLESGASFLDSPGYSKDKPSANKKDAETGSSQCQTPGSTASSEPVSPLQEKLSPFFTLDLSPTEDKSSKPSSFTEKVVYAFSPKIGRKLSKSPSMSISEPISVTLPPRVSEVIGTVSNTTAQNASSSTWDKCVEERDATNRSPTQIVKMKTNETVAQEAYESEVQPLDQVAAEEVELPGKEDQSVSSSQSKAVASGQTQTGAVTHDPPQDSVPVSSVSLIPPPPPPKNVARMLALALAESAQQASTQSLKRPGTSQAGYTNYGDIAVATTEDNLSSSYSAVALDKAYFQTDRPAEQFHLQNNAPGNCDHPLPETTATGDPTHSNTTESGEQHHQVDLTGNQPHQAYLSGDPEKARITSVPLDSEKSDDHVSFPEDQSGKNSMPTVSFLDQDQSPPRFYSGDQPPSYLGASVDKLHHPLEFADKSPTPPNLPSDKIYPPSGSPEENTSTATMTYMTTTPATAQMSTKEASWDVAEQPTTADFAAATLQRTHRTNRPLPPPPSQRSAEQPPVVGQVQAATNIGLNNSHKVQGVVPVPERPPEPRAMDDPASAFISDSGAAAAQCPMATAVQPGLPEKVRDGARVPLLHLRAESVPAHPCGFPAPLPPTRMMESKMIAAIHSSSADATSSSNYHSFVTASSTSVDDALPLPLPVPQPKHASQKTVYSSFARPDVTTEPFGPDNCLHFNMTPNCQYRPQSVPPHHNKLEQHQVYGARSEPPASMGLRYNTYVAPGRNASGHHSKPCSRVEYVSSLSSSVRNTCYPEDIPPYPTIRRVQSLHAPPSSMIRSVPISRTEVPPDDEPAYCPRPLYQYKPYQSSQARSDYHVTQLQPYFENGRVHYRYSPYSSSSSSYYSPDGALCDVDAYGTVQLRPLHRLPNRDFAFYNPRLQGKSLYSYAGLAPRPRANVTGYFSPNDHNVVSMPPAADVKHTYTSWDLEDMEKYRMQSIRRESRARQKVKGPVMSQYDNMTPAVQDDLGGIYVIHLRSKSDPGKTGLLSVAEGKESRHAAKAISPEGEDRFYRRHPEAEMDRAHHHGGHGSTQPEKPSLPQKQSSLRSRKLPDMGCSLPEHRAHQEASHRQFCESKNGPPYPQGAGQLDYGSKGIPDTSEPVSYHNSGVKYAASGQESLRLNHKEVRLSKEMERPWVRQPSAPEKHSRDCYKEEEHLTQSIVPPPKPERSHSLKLHHTQNVERDPSVLYQYQPHGKRQSSVTVVSQYDNLEDYHSLPQHQRGVFGGGGMGTYVPPGFPHPQSRTYATALGQGAFLPAELSLQHPETQIH AERho GTPase-activating protein 32MKSRPTKQKLKQRGILKERVFGCDLGEHLLNSGFEVPQVLQSCTA Variant 3FIERYGIVDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHS SEQ ID NO: 109VGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNHVDVLFSGRISMAMQEGAASLSRPKSLLVSSPSTKLLTLEEAQARTQAQVNSPIVTENKYIEVGEGPAALQGKFHTIIEFPLERKRPQNKMKKSPVGSWRSFFNLGKSSSVSKRKLQRNESEPSEMKAMALKGGRAEGTLRSAKSEESLTSLHAVDGDSKLFRPRRPRSSSDALSASFNGEMLGNRCNSYDNLPHDNESEEEGGLLHIPALMSPHSAEDVDLSPPDIGVASLDFDPMSFQCSPPKAESECLESGASFLDSPGYSKDKPSANKKDAETGSSQCQTPGSTASSEPVSPLQEKLSPFFTLDLSPTEDKSSKPSSFTEKVVYAFSPKIGRKLSKSPSMSISEPISVTLPPRVSEVIGTVSNTTAQNASSSTWDKCVEERDATNRSPTQIVKMKTNETVAQEAYESEVQPLDQVAAEEVELPGKEDQSVSSSQSKAVASGQTQTGAVTHDPPQDSVPVSSVSLIPPPPPPKNVARMLALALAESAQQASTQSLKRPGTSQAGYTNYGDIAVATTEDNLSSSYSAVALDKAYFQTDRPAEQFHLQNNAPGNCDHPLPETTATGDPTHSNTTESGEQHHQVDLTGNQPHQAYLSGDPEKARITSVPLDSEKSDDHVSFPEDQSGKNSMPTVSFLDQDQSPPRFYSGDQPPSYLGASVDKLHHPLEFADKSPTPPNLPSDKIYPPSGSPEENTSTATMTYMTTTPATAQMSTKEASWDVAEQPTTADFAAATLQRTHRTNRPLPPPPSQRSAEQPPVVGQVQAATNIGLNNSHKVQGVVPVPERPPEPRAMDDPASAFISDSGAAAAQCPMATAVQPGLPEKVRDGARVPLLHLRAESVPAHPCGFPAPLPPTRMMESKMIAAIHSSSADATSSSNYHSFVTASSTSVDDALPLPLPVPQPKHASQKTVYSSFARPDVTTEPFGPDNCLHFNMTPNCQYRPQSVPPHHNKLEQHQVYGARSEPPASMGLRYNTYVAPGRNASGHHSKPCSRVEYVSSLSSSVRNTCYPEDIPPYPTIRRVQSLHAPPSSMIRSVPISRTEVPPDDEPAYCPRPLYQYKPYQSSQARSDYHVTQLQPYFENGRVHYRYSPYSSSSSSYYSPDGALCDVDAYGTVQLRPLHRLPNRDFAFYNPRLQGKSLYSYAGLAPRPRANVTGYFSPNDHNVVSMPPAADVKHTYTSWDLEDMEKYRMQSIRRESRARQKVKGPVMSQYDNMTPAVQDDLGGIYVIHLRSKSDPGKTGLLSVAEGKESRHAAKAISPEGEDRFYRRHPEAEMDRAHHHGGHGSTQPEKPSLPQKQSSLRSRKLPDMGCSLPEHRAHQEASHRQFCESKNGPPYPQGAGQLDYGSKGIPDTSEPVSYHNSGVKYAASGQESLRLNHKEVRLSKEMERPWVRQPSAPEKHSRDCYKEEEHLTQSIVPPPKPERSHSLKLHHTQNVERDPSVLYQYQPHGKRQSSVTVVSQYDNLEDYHSLPQHQRGVFGGGGMGTYVPPGFPHPQSRTYATALGQGAFLPAELSLQHPETQIH AERho GTPase-activating protein 32MARGADVPEIPGDLTLKTCGSTASMKVKHVKKLPFTKGHFPKMA Variant 4ECAHFHYENVEFGSIQLSLSEEQNEVMKNGCESKELVYLVQIACQ SEQ ID NO: 110GKSWIVKRSYEDFRVLDKHLHLCIYDRRFSQLSELPRSDTLKDSPESVTQMLMAYLSRLSAIAGNKINCGPALTWMEIDNKGNHLLVHEESSINTPAVGAAHVIKRYTARAPDELTLEVGDIVSVIDMPPKVLSTWWRGKHGFQVGLFPGHCVELINQKVPQSVTNSVPKPVSKKHGKLITFLRTFMKSRPTKQKLKQRGILKERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGIVDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNHVDVLFSGRISMAMQEGAASLSRPKSLLVSSPSTKLLTLEEAQARTQAQVNSPIVTENKYIEVGEGPAALQGKFHTIIEFPLERKRPQNKMKKSPVGSWRSFFNLGKSSSVSKRKLQRNESEPSEMKAMALKGGRAEGTLRSAKSEESLTSLHAVDGDSKLFRPRRPRSSSDALSASFNGEMLGNRCNSYDNLPHDNESEEEGGLLHIPALMSPHSAEDVDLSPPDIGVASLDFDPMSFQCSPPKAESECLESGASFLDSPGYSKDKPSANKKDAETGSSQCQTPGSTASSEPVSPLQEKLSPFFTLDLSPTEDKSSKPSSFTEKVVYAFSPKIGRKLSKSPSMSISEPISVTLPPRVSEVIGTVSNTTAQNASSSTWDKCVEERDATNRSPTQIVKMKTNETVAQEAYESEVQPLDQVAAEEVELPGKEDQSVSSSQSKAVASGQTQTGTVCFPPFFL Rho GTPase-activating protein 32MKSSVHSEEDDFVPELHRNVHPRERPDWEETLSAMARGADVPEIP Variant 5GDLTLKTCGSTASMKVKHVKKSTTPGLMGCDNIHRLPFTKGHFPK SEQ ID NO: 111MAECAHFHYENVEFGSIQLSLSEEQNEVMKNGCESKELVYLVQIACQGKSWIVKRSYEDFRVLDKHLHLCIYDRRFSQLSELPRSDTLCytoskeletal Keratin 78 type IIMEGHEASPAQVGQGDRGKVRFLEQQNKVLETKWHLLQQQGLSG Variant 2SQQGLEPVFEACLDQLRKQLEQLQGERGALDAELKACRDQEEEYK SEQ ID NO: 112SKYEEEAHRRATLENDFVVLKKDVDGVFLSKMELEGKLEALREYLYFLKHLNEEELGQLQTQASDTSVVLSMDNNRYLDFSSIITEVRARYEEIARSSKAEAEALYQTKYQELQVSAQLHGDRMQETKVQISQLHQEIQRLQSQTENLKKQNASLQAAITDAEQRGELALKDAQAKVDELEAALRMAKQNLARLLCEYQELTSTKLSLDVEIATYRRLLEGEECRMSGECTSQVTISSVGGSAVMSGGVGGGLGSTCGLGSGKGSPGSCCTSIVTGGSNIILGSGKDPVLDSCSVSGSSAGSSCHTILKKTVESSLKTSIT YCytoskeletal Keratin 78 type IIXDVEIATYRRLLEGEECSLGGRQRCHVWRSWWRLGEHLWTR Variant 3 SEQ ID NO: 113Collagen type VI, alpha 3 MRKHRHLPLVAVFCLFLSGFPTTHAQQQQAAQDSADIIFLIDGSNNVariant 2 TGSVNFAVILDFLVNLLEKLPIGTQQIRVGVVQFSDEPRTMFSLDTY SEQ ID NO: 114STKAQVLGAVKALGFAGGELANIGLALDFVVENHFTRAGGSRVEEGVPQVLVLISAGPSSDEIRYGVVALKQASVFSFGLGAQAASRAELQHIATDDNLVFTVPEFRSFGDLQEKLLPYIVGVAQRHIVLKPPTIVTQVIEVNKRDIVFLVDGSSALGLANFNAIRDFIAKVIQRLEIGQDLIQVAVAQYADTVRPEFYFNTHPTKREVITAVRKMKPLDGSALYTGSALDFVRNNLFTSSAGYRAAEGIPKLLVLITGGKSLDEISQPAQELKRSSIMAFAIGNKGADQAELEEIAFDSSLVFIPAEFRAAPLQGMLPGLLAPLRTLSGTPEVHSNKRDIIFLLDGSANVGKTNFPYVRDFVMNLVNSLDIGNDNIRVGLVQFSDTPVTEFSLNTYQTKSDILGHLRQLQLQGGSGLNTGSALSYVYANHFTEAGGSRIREHVPQLLLLLTAGQSEDSYLQAANALTRAGILTFCVGASQANKAELEQIAFNPSLVYLMDDFSSLPALPQQLIQPLTTYVSGGVEEVPLAQPESKRDILFLFDGSANLVGQFPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDVKVESRFDEHQSKPEILNLVKRMKIKTGKALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAGRSSDRVDGPASNLKQSGVVPFIFQAKNADPAELEQIVLSPAFILAAESLPKIGDLHPQIVNLLKSVHNGAPAPVSGEKDVVFLLDGSEGVRSGFPLLKEFVQRVVESLDVGQDRVRVAVVQYSDRTRPEFYLNSYMNKQDVVNAVRQLTLLGGPTPNTGAALEFVLRNILVSSAGSRITEGVPQLLIVLTADRSGDDVRNPSVVVKRGGAVPIGIGIGNADITEMQTISFIPDFAVAIPTFRQLGTVQQVISERVTQLTREELSRLQPVLQPLPSPGVGGKRDVVFLIDGSQSAGPEFQYVRTLIERLVDYLDVGFDTTRVAVIQFSDDPKVEFLLNAHSSKDEVQNAVQRLRPKGGRQINVGNALEYVSRNIFKRPLGSRIEEGVPQFLVLISSGKSDDEVDDPAVELKQFGVAPFTIARNADQEELVKISLSPEYVFSVSTFRELPSLEQKLLTPITTLTSEQIQKLLASTRYPPPAVESDAADIVFLIDSSEGVRPDGFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVLDAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFAQVIRSSGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGPSAATPAPPGVDTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNSDPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQELSELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAILNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYVLTEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILVGLERVVNLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGPIGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPGEPGPKGGIGNRGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGDPGYPGPAGPKGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFPTELAFALDTSEGVNQDTFGRMRDVVLSIVNDLTIAESNCPRGARVAVVTYNNEVTTEIRFADSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPTRASPQLREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCHVCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYLVRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRGMTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCKGYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENAFYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKMATVRPPVAVKPATAAKPVAAKPAAVRPPAAAAAKPVATKPEVPRPQAAKPAATKPATTKPMVKMSREVQVFEITENSAKLHWERAEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCYLRSQVRATYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTCRDFILKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVISVMGT Collagen type VI, alpha 3MRKHRHLPLVAVFCLFLSGFPTTHAQQQQAAQDSADIIFLIDGSNN Variant 3TGSVNFAVILDFLVNLLEKLPIGTQQIRVGVVQFSDEPRTMFSLDTY SEQ ID NO: 115STKAQVLGAVKALGFAGGELANIGLALDFVVENHFTRAGGSRVEEGVPQVLVLISAGPSSDEIRYGVVALKQASVFSFGLGAQAASRAELQHIATDDNLVFTVPEFRSFGDLQEKLLPYIVGVAQRHIVLKPPTIVTQVIEVNKRDIVFLVDGSSALGLANFNAIRDFIAKVIQRLEIGQDLIQVAVAQYADTVRPEFYFNTHPTKREVITAVRKMKPLDGSALYTGSALDFVRNNLFTSSAGYRAAEGIPKLLVLITGGKSLDEISQPAQELKRSSIMAFAIGNKGADQAELEEIAFDSSLVFIPAEFRAAPLQGMLPGLLAPLRTLSGTPEVHSNKRDIIFLLDGSANVGKTNFPYVRDFVMNLVNSLDIGNDNIRVGLVQFSDTPVTEFSLNTYQTKSDILGHLRQLQLQGGSGLNTGSALSYVYANHFTEAGGSRIREHVPQLLLLLTAGQSEDSYLQAANALTRAGILTFCVGASQANKAELEQIAFNPSLVYLMDDFSSLPALPQQLIQPLTTYVSGGVEEVPLAQPESKRDILFLFDGSANLVGQFPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDVKVESRFDEHQSKPEILNLVKRMKIKTGKALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAGRSSDRVDGPASNLKQSGVVPFIFQAKNADPAELEQIVLSPAFILAAESLPKIGDLHPQIVNLLKSVHNGAPAPVSGEKDVVFLLDGSEGVRSGFPLLKEFVQRVVESLDVGQDRVRVAVVQYSDRTRPEFYLNSYMNKQDVVNAVRQLTLLGGPTPNTGAALEFVLRNILVSSAGSRITEGVPQLLIVLTADRSGDDVRNPSVVVKRGGAVPIGIGIGNADITEMQTISFIPDFAVAIPTFRQLGTVQQVISERVTQLTREELSRLQPVLQPLPSPGVGGKRDVVFLIDGSQSAGPEFQYVRTLIERLVDYLDVGFDTTRVAVIQFSDDPKVEFLLNAHSSKDEVQNAVQRLRPKGGRQINVGNALEYVSRNIFKRPLGSRIEEGVPQFLVLISSGKSDDEVDDPAVELKQFGVAPFTIARNADQEELVKISLSPEYVFSVSTFRELPSLEQKLLTPITTLTSEQIQKLLASTRYPPPAVESDAADIVFLIDSSEGVRPDGFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVLDAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFAQVIRSSGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGPSAATPAPPGVDTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNSDPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQELSELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAILNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYVLTEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILVGLERVVNLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGPIGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPGEPGPKGGIGNRGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGDPGYPGPAGPKGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFPTELAFALDTSEGVNQDTFGRMRDVVLSIVNDLTIAESNCPRGARVAVVTYNNEVTTEIRFADSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPTRASPQLREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCHVCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYLVRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRGMTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCKGYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENAFYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKMATVRPPVAVKPATAAKPVAAKPAAVRPPAAAAAKPVATKPEVPRPQAAKPAATKPATTKPMVKMSREVQVFEITENSAKLHWERAEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCYLRSQVRATYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTCRDFILKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVISVMGT Collagen type VI, alpha 3MRKHRHLPLVAVFCLFLSGFPTTHAQQQQAVIEVNKRDIVFLVDG Variant 4SSALGLANFNAIRDFIAKVIQRLEIGQDLIQVAVAQYADTVRPEFYF SEQ ID NO: 116NTHPTKREVITAVRKMKPLDGSALYTGSALDFVRNNLFTSSAGYRAAEGIPKLLVLITGGKSLDEISQPAQELKRSSIMAFAIGNKGADQAELEEIAFDSSLVFIPAEFRAAPLQGMLPGLLAPLRTLSGTPEESKRDILFLFDGSANLVGQFPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDVKVESRFDEHQSKPEILNLVKRMKIKTGKALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAGRSSDRVDGPASNLKQSGVVPFIFQAKNADPAELEQIVLSPAFILAAESLPKIGDLHPQIVNLLKSVHNGAPAPVSGEKDVVFLLDGSEGVRSGFPLLKEFVQRVVESLDVGQDRVRVAVVQYSDRTRPEFYLNSYMNKQDVVNAVRQLTLLGGPTPNTGAALEFVLRNILVSSAGSRITEGVPQLLIVLTADRSGDDVRNPSVVVKRGGAVPIGIGIGNADITEMQTISFIPDFAVAIPTFRQLGTVQQVISERVTQLTREELSRLQPVLQPLPSPGVGGKRDVVFLIDGSQSAGPEFQYVRTLIERLVDYLDVGFDTTRVAVIQFSDDPKVEFLLNAHSSKDEVQNAVQRLRPKGGRQINVGNALEYVSRNIFKRPLGSRIEEGVPQFLVLISSGKSDDEVDDPAVELKQFGVAPFTIARNADQEELVKISLSPEYVFSVSTFRELPSLEQKLLTPITTLTSEQIQKLLASTRYPPPAVESDAADIVFLIDSSEGVRPDGFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVLDAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFAQVIRSSGIVSLGVGDRNIDRILLQTITNDPRLVFTVREFRELPNIEERIMNSFGPSAATPAPPGVDTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNSDPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQELSELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAILNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYVLTEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILVGLERVVNLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGPIGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPGEPGPKGGIGNRGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGDPGYPGPAGPKGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFPTELAFALDTSEGVNQDTFGRMRDVVLSIVNDLTIAESNCPRGARVAVVTYNNEVTTEIRFADSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPTRASPQLREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCHVCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYLVRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRGMTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCKGYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENAFYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKMATVRPPVAVKPATAAKPVAAKPAAVRPPAAAAAKPVATKPEVPRPQAAKPAATKPATTKPMVKMSREVQVFEITENSAKLHWERAEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCYLRSQVRATYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTCRDFILKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVI SVMGTCollagen type VI, alpha 3 MRKHRHLPLVAVFCLFLSGFPTTHAQQQQAAQDSADIIFLIDGSNNVariant 5 TGSVNFAVILDFLVNLLEKLPIGTQQIRVGVVQFSDEPRTMFSLDTY SEQ ID NO: 117STKAQVLGAVKALGFAGGELANIGLALDFVVENHFTRAGGSRVEEGVPQVLVLISAGPSSDEIRYGVVALKQASVFSFGLGAQAASRAELQHIATDDNLVFTVPEFRSFGDLQEKLLPYIVGVAQRHIVLKPPTIVTQVIEVNKRDIVFLVDGSSALGLANFNAIRDFIAKVIQRLEIGQDLIQVAVAQYADTVRPEFYFNTHPTKREVITAVRKMKPLDGSALYTGSALDFVRNNLFTSSAGYRAAEGIPKLLVLITGGKSLDEISQPAQELKRSSIMAFAIGNKGADQAELEEIAFDSSLVFIPAEFRAAPLQGMLPGLLAPLRTLSGTPEVHSNKRDIIFLLDGSANVGKTNFPYVRDFVMNLVNSLDIGNDNIRVGLVQFSDTPVTEFSLNTYQTKSDILGHLRQLQLQGGSGLNTGSALSYVYANHFTEAGGSRIREHVPQLLLLLTAGQSEDSYLQAANALTRAGILTFCVGASQANKAELEQIAFNPSLVYLMDDFSSLPALPQQLIQPLTTYVSGGVEEVPLAQPESKRDILFLFDGSANLVGQFPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDVKVESRFDEHQSKPEILNLVKRMKIKTGKALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAGRSSDRVDGPASNLKQSGVVPFIFQAKNADPAELEQIVLSPAFILAAESLPKIGDLHPQIVNLLKSVHNGAPAPVSGEKDVVFLLDGSEGVRSGFPLLKEFVQRVVESLDVGQDRVRVAVVQYSDRTRPEFYLNSYMNKQDVVNAVRQLTLLGGPTPNTGAALEFVLRNILVSSAGSRITEGVPQLLIVLTADRSGDDVRNPSVVVKRGGAVPIGIGIGNADITEMQTISFIPDFAVAIPTFRQLGTVQQVISERVTQLTREELSRLQPVLQPLPSPGVGGKRDVVFLIDGSQSAGPEFQYVRTLIERLVDYLDVGFDTTRVAVIQFSDDPKVEFLLNAHSSKDEVQNAVQRLRPKGGRQINVGNALEYVSRNIFKRPLGSRIEEGVPQFLVLISSGKSDDEVDDPAVELKQFGVAPFTIARNADQEELVKISLSPEYVFSVSTFRELPSLEQKLLTPITTLTSEQIQKLLASTRYPPPGEMGASEVLLGAFSI Collagen type VI, alpha 3MRKHRHLPLVAVFCLFLSGFPTTHAQQQQAVIEVNKRDIVFLVDG Variant 6SSALGLANFNAIRDFIAKVIQRLEIGQDLIQVAVAQYADTVRPEFYF SEQ ID NO: 118NTHPTKREVITAVRKMKPLDGSALYTGSALDFVRNNLFTSSAGYRAAEGIPKLLVLITGGKSLDEISQPAQELKRSSIMAFAIGNKGADQAELEEIAFDSSLVFIPAEFRAAPLQGMLPGLLAPLRTLSGTPEVHSNKRDIIFLLDGSANVGKTNFPYVRDFVMNLVNSLDIGNDNIRVGLVQFSDTPVTEFSLNTYQTKSDILGHLRQLQLQGGSGLNTGSALSYVYANHFTEAGGSRIREHVPQLLLLLTAGQSEDSYLQAANALTRAGILTFCVGASQANKAELEQIAFNPSLVYLMDDFSSLPALPQQLIQPLTTYVSGGVEEVPLAQPESKRDILFLFDGSANLVGQFPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDVKVESRFDEHQSKPEILNLVKRMKIKTGKALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAGRSSDRVDGPASNLKQSGVVPFIFQAKNADPAELEQIVLSPAFILAAESLPKIGDLHPQIVNLLKSVHNGAPAPVSGEKDVVFLLDGSEGVRSGFPLLKEFVQRVVESLDVGQDRVRVAVVQYSDRTRPEFYLNSYMNKQDVVNAVRQLTLLGGPTPNTGAALEFVLRNILVSSAGSRITEGVPQLLIVLTADRSGDDVRNPSVVVKRGGAVPIGIGIGNADITEMQTISFIPDFAVAIPTFRQLGTVQQVISERVTQLTREELSRLQPVLQPLPSPGVGGKRDVVFLIDGSQSAGPEFQYVRTLIERLVDYLDVGFDTTRVAVIQFSDDPKVEFLLNAHSSKDEVQNAVQRLRPKGGRQINVGNALEYVSRNIFKRPLGSRIEEGVPQFLVLISSGKSDDEVDDPAVELKQFGVAPFTIARNADQEELVKISLSPEYVFSVSTFRELPSLEQKLLTPITTLTSEQIQKLLAST RYPPPGEMGASEVLLGAFSICollagen type VI, alpha 3 MRKHRHLPLVAVFCLFLSGFPTTHAQQQQAVIEVNKRDIVFLVDGVariant 7 SSALGLANFNAIRDFIAKVIQRLEIGQDLIQVAVAQYADTVRPEFYF SEQ ID NO: 119NTHPTKREVITAVRKMKPLDGSALYTGSALDFVRNNLFTSSAGYRAAEGIPKLLVLITGGKSLDEISQPAQELKRSSIMAFAIGNKGADQAELEEIAFDSSLVFIPAEFRAAPLQGMLPGLLAPLRTLSGTPEESKRDILFLFDGSANLVGQFPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDVKVESRFDEHQSKPEILNLVKRMKIKTGKALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAGRSSDRVDGPASNLKQSGVVPFIFQAKNADPAELEQIVLSPAFILAAESLPKIGDLHPQIVNLLKSVHNGAPAPVSGEKDVVFLLDGSEGVRSGFPLLKEFVQRVVESLDVGQDRVRVAVVQYSDRTRPEFYLNSYMNKQDVVNAVRQLTLLGGPTPNTGAALEFVLRNILVSSAGSRITEGVPQLLIVLTADRSGDDVRNPSVVVKRGGAVPIGIGIGNADITEMQTISFIPDFAVAIPTFRQLGTVQQVISERVTQLTREELSRLQPVLQPLPSPGVGGKRDVVFLIDGSQSAGPEFQYVRTLIERLVDYLDVGFDTTRVAVIQFSDDPKVEFLLNAHSSKDEVQNAVQRLRPKGGRQINVGNALEYVSRNIFKRPLGSRIEEGVPQFLVLISSGKSDDEVDDPAVELKQFGVAPFTIARNADQEELVKISLSPEYVFSVSTFRELPSLEQKLLTPITTLTSEQIQKLLASTRYPPPAVESDAADIVFLIDSSEGVRPDGFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVLDAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFAQVIRSSGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGPSAATPAPPGVDTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNSDPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQELSELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAILNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYVLTEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILVGLERVVNLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGPIGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPGEPGPKGGIGNRGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGDPGYPGPAGPKGNRGDSIDQCALIQSIKDKCPFHGPLECPVFPIELAFALDTSEGVNQDTFGRMRDVVLSIVNDLTIAESNCPRGARVAVVTYNNEVTTEIRFADSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPTRASPQLREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCHVCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYLVRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRGMTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCKGYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENAFYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKMATVRPPVAVKPATAAKPVAAKPAAVRPPAAAAAKPVATKPEVPRPQAAKPAATKPATTKPMVKMSREVQVFEITENSAKLHWERAEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCYLRSQVRATYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTCRDFILKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVI SVMGTCollagen type VI, alpha 3 MRKHRHLPLVAVFCLFLSGFPTTHAQQQQADVKNGAAADIIFLVDVariant 8 SSWTIGEEHFQLVREFLYDVVKSLAVGENDFHFALVQFNGNPHTE SEQ ID NO: 120FLLNTYRTKQEVLSHISNMSYIGGTNQTGKGLEYIMQSHLTKAAGSRAGDGVPQVIVVLTDGHSKDGLALPSAELKSADVNVFAIGVEDADEGALKEIASEPLNMHMFNLENFTSLHDIVGNLVSCVHSSVSPERAGDIETLKDITAQDSADIIFLIDGSNNTGSVNFAVILDFLVNLLEKLPIGTQQIRVGVVQFSDEPRTMFSLDTYSTKAQVLGAVKALGFAGGELANIGLALDFVVENHFTRAGGSRVEEGVPQVLVLISAGPSSDEIRYGVVALKQASVFSFGLGAQAASRAELQHIATDDNLVFTVPEFRSFGDLQEKLLPYIVGVAQRHIVLKPPTIVTQVIEVNKRDIVFLVDGSSALGLANFNAIRDFIAKVIQRLEIGQDLIQVAVAQYADTVRPEFYFNTHPTKREVITAVRKMKPLDGSALYTGSALDFVRNNLFTSSAGYRAAEGIPKLLVLITGGKSLDEISQPAQELKRSSIMAFAIGNKGADQAELEEIAFDSSLVFIPAEFRAAPLQGMLPGLLAPLRTLSGTPEESKRDILFLFDGSANLVGQFPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDVKVESRFDE HQSKPEILNLVKRMKICollagen type VI, alpha 3 PIGTQQIRVGVVQFSDEPRTMFSLDTYSTKAQVLGAVKALGFAGGVariant 9 ELANIGLALDFVVENHFTRAGGSRVEEGVPQVLVLISAGPSSDEIRY SEQ ID NO: 121GVVALKQASVFSFGLGAQAASRAELQHIATDDNLVFTVPEFRSFGDLQEKLLPYIVGVAQRHIVLKPPTIVTQEYGLNENW Proteasome subunit beta type-5MALASVLERPLPVNQRGFFGLGGRADLLDLGPGSLSDGLSLAAPG Variant 2WGVPEEPGIEMLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTV SEQ ID NO: 122KKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPVSEVLCLKPKS FGMYLFCGCAERIGNMARPLLRGQProteasome subunit beta type-5MAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVY Variant 3QYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGS SEQ ID NO: 123VYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYSGSTP Proteasome subunit beta type-5MALASVLERPLPVNQRGFFGLGGRADLLDLGPGSLSDGLSLAAPG Variant 4WGVPEEPGIEMLHGTTTLAFKASTTWTVKGTGFQGPPSL SEQ ID NO: 124Proteasome subunit beta type-5XGIEMLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEIN Variant 5PYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLL SEQ ID NO: 125ANMVYQYKGMGLSMGTMICGWDKRGPG Heterogeneous nuclearMEREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPA ribonucleoproteins A2/B1SKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREES Variant 2GKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQS SEQ ID NO: 126GKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY Heterogeneous nuclearMEREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPA ribonucleoproteins A2/B1SKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREES Variant 3GKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQS SEQ ID NO: 127GKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY Heterogeneous nuclearMEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGK ribonucleoproteins A2/B1LTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRV Variant 4VEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEY SEQ ID NO: 128GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEDLEVAILEVAPVMEEEEEDMVVEDLDMATRVGATEVVMTTMEEEIMEVEITMILEIITSNLLTTVQ Beta enolaseMAMQKIFAREILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYE Variant 2ALELRDGDKGRYLGKGVLKAVENINNTLGPALLQKKLSVVDQEK SEQ ID NO: 129VDKFMIELDGTENKSKFGANAILGVSLAVCKAGAAEKGVPLYRHIADLAGNPDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMRIGAEVYHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAGYPDKVVIGMDVAASEFYRNGKYDLDFKSPDDPARHITGEKLGELYKSFIKNYPVVSIEDPFDQDDWATWTSFLSGVNIQIVGDDLTVTNPKRIAQAVEKKACNCLLLKVNQIGSVTESIQACKLAQSNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEALGDKAIFAGRKFRNPKAK Beta enolaseMAMQKIFAREILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYE Variant 3ALELRDGDKGRYLGKGVLKAVENINNTLGPALLQKKLSVVDQEK SEQ ID NO: 130VDKFMIELDGTENKSKFGANAILGVSLAVCKAGAAEKGVPLYRHIADLAGNPDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMRIGAEVYHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAGYPDKVVIGMDVAASEFYRNGKYDLDFKSPDDPARHITGEKLGELYKSFIKNYPVVSIEDPFDQDDWATWTSFLSGVNIQIVGDDLTVTNPKRIAQAVEKKACNCLLLKVNQIGSVTESIQACKLAQSNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEALGDKAIFAGRKFRNPKAK Beta enolaseMAMQKIFAREILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYE Variant 4ALELRDGDKGRYLGKAKFGANAILGVSLAVCKAGAAEKGVPLYR SEQ ID NO: 131HIADLAGNPDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMRIGAEVYHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAGYPDKVVIGMDVAASEFYRNGKYDLDFKSPDDPARHITGEKLGELYKSFIKNYPVVSIEDPFDQDDWATWTSFLSGVNIQIVGDDLTVTNPKRIAQAVEKKACNCLLLKVNQIGSVTESIQACKLAQSNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEALGDKAIFAGRKFRNPKAK Beta enolaseMAMQKIFAREILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYE Variant 5ALELRDGDKGRYLGKGVLKAVENINNTLGPALLQKKLSVVDQEK SEQ ID NO: 132VDKFMIELDGTENKSKFGANAILGVSLAVCKAGAAEKGVPLYRHIADLAGNPDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMRIGAEVYHHLKGVIKAKYGKDATNVGDEGG Beta enolaseMAMQKIFAREILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYE Variant 6ALELRDGDKGRYLGKGVLKAVENINNTLGPALLQKKLSVVDQEK SEQ ID NO: 133VDKFMIELDGTENKSKFGANAILGVSLAVCKAGAAEKGVPLYRHIADLAGNPDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKE AMRIGAEVYHHLKGVIBeta enolase MAMQKIFAREILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYE Variant 7ALELRDGDKGRYLGKGVLKAVENINNTLGPALLQKKLSVVDQEK SEQ ID NO: 134VDKFMIELDGTENKSKFGANAILGVSLAVCKAGAAEKGVPLYRHI ADLAGNPDLILPVPBeta enolase MAMQKIFAREILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYE Variant 8ALELRDGDKGRYLGKGVLKAVENINNTLGPALLQKKLSVVDQEK SEQ ID NO: 135VDKFMIELDGTENKSKFGANAILGVSLAVCKAGAAEKGVPLYRHI ADLAGNPDLILPVPBeta enolase MAMQKIFAREILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYE Variant 9ALELRDGDKGRYLGKGVLKAVENINNTLGPALLQKKLSVVDQEK SEQ ID NO: 136VDKFMIELDGTENKSKFGANAILGVSLAVCKAGAAEKGVPLYRHI ADLAGNPDLILPVPAFNVINBeta enolase MAMQKIFAREILDSRGNPTVEVDLHTAK Variant 10 SEQ ID NO: 137Glutathione 5-transferase P MPPYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTVETWQEGSVariant 2 LKASCLYGQLPKFQDGDLTLYQSNTILRHLGRTLGLYGKDQQEAA SEQ ID NO: 138LVDMVNDGVEDLRCKYISLIYTNYISFADYNLLDLLLIHEVLAPGCLDAFPLLSAYVGRLSARPKLKAFLASPEYVNLPINGNGKQ Glutathione 5-transferase PEAGKDDYVKALPGQLKPFETLLSQNQGGKTFIVGDQVSIWPHAVP Variant 3SSPPSASRWTQVSPSLTTTCWTCC SEQ ID NO: 139 Glutathione S-transferase Mu 3MSCESSMVLGYWDIRGLAHAIRLLLEFTDTSYEEKRYTCGEAPDY Variant 2DRSQWLDVKFKLDLDFPNLPYLLDGKNKITQSNAILRYIARKHNM SEQ ID NO: 140CGETEEEKIRVDIIENQVMDFRTQLIRLCYSSDHEKLKPQYLEELPGQLKQFSMFLGKFSWFAGEKLTFVDFLTYD Glutathione S-transferase Mu 3MSCESSMVLGYWDIRGLAHAIRLLLEFTDTSYEEKRYTCGEAPDY Variant 3DRSQWLDVKFKLDLDFPNLPYLLDGKNKITQSNAILRYIARKHNM SEQ ID NO: 141CGETEEEKIRVDIIENQVMDFRTQLIRLCYSSDHEKLKPQYLEELPGQLKQFSMFLGKFSWFAGEKLTFVDFLTYDILDQNRIFDPKCLDEFPNLKAFMCRFGDVLHFLYKTLTAPLGPADP Rho 23 GTPase-activating proteinMNGVAFCLVGIPPRPEPRPPQLPLGPRDGCSPRRPFPWQGPRTLLL Variant 2YKSPQDGFGFTLRHFIVYPPESAVHCSLKEEENGGRGGGPSPRYRL SEQ ID NO: 142EPMDTIFVKNVKEDGPAHRAGLRTGDRLVKVNGESVIGKTYSQVIALIQNSDDTLELSIMPKDEDILQLAYSQDAYLKGNEPYSGEARSIPEPPPICYPRKTYAPPARASTRATMVPEPTSALPSDPRSPAAWSDPGLRVPPAARAHLDNSSLGMSQPRPSPGAFPHLSSEPRTPRAFPEPGSRVPPSRLECQQALSHWLSNQVPRRAGERRCPAMAPRARSASQDRLEEVAAPRPWPCSTSQDALSQLGQEGWHRARSDDYLSRATRSAEALGPGALVSPRFERCGWASQRSSARTPACPTRDLPGPQAPPPSGLQGLDDLGYIGYRSYSPSFQRRTGLLHALSFRDSPFGGLPTFNLAQSPASFPPEASEPPRVVRPEPSTRALEPPAEDRGDEVVLRQKPPTGRKVQLTPARQMNLGFGDESPEPEASGRGERLGRKVAPLATTEDSLASIPFIDEPTSPSIDLQAKHVPASAVVSSAMNSAPVLGTSPSSPTFTFTLGRHYSQDCSSIKAGRRSSYLLAITTERSKSCDDGLNTFRDEGRVLRRLPNRIPSLRMLRSFFTDGSLDSWGTSEDADAPSKRHSTSDLSDATFSDIRREGWLYYKQILTKKGKKAGSGLRQWKRVYAALRARSLSLSKERREPGPAAAGAAAAGAGEDEAAPVCIGSCLVDISYSETKRRHVFRLTTADFCEYLFQAEDRDDMLGWIRAIRENSRAEGEDPGCANQALISKKLNDYRKVSHSSGPKADSSPKGSRGLGGLKSEFLKQSAARGLRTQDLPAGSKDDSAAAPKTPWGINIIKKNKKAAPRAFGVRLEECQPATENQRVPLIVAACCRIVEARGLESTGIYRVPGNNAVVSSLQEQLNRGPGDINLQDERWQDLNVISSLLKSFFRKLPEPLFTDDKYNDFIEANRIEDARERMRTLRKLIRDLPGHYYETLKFLVGHLKTIADHSEKNKMEPRNLALVFGPTLVRTSEDNMTDMVTHMPDRYKIVETLIQHSDWFFSDEEDKGERTPVGDKEPQAVPNIEYLLPNIGRTVPPGDPGSADLLEI ARHGAP23MDTIFVKNVKEDGPAHRAGLRTGDRLVKVNGESVIGKTYSQVIAL Variant 3IQNSDDTLELSIMPKDEDILQLAYSQDAYLKGNEPYSGEARSIPEPP SEQ ID NO: 143PICYPRKTYA ARHGAP23 XFFSDEEDKGERTPVGDKEPQAVPNIEYLLPNIGRTVPPGDPGSDSTVariant 4 TCSSAKSKVRMKAILKA SEQ ID NO: 144 ARHGAP23XTFSDIRREGWLYYKQILTKKGKAEDRDDMLGWIRAIRENSRAEG Variant 5EDPGCANQALISKKLNDYRKVSHSSGPKADSSPKGSRGLGGLKSEF SEQ ID NO: 145LKQSAARGLRTQDLPAGSKDDSAAAPKTPWGINIIKKNKKAAPRAFGVRLEECQPATENQRVPLIVAACCRI ARHGAP23IRDLPGHYYETLKFLVGHLKTIADHSEKNKMEPRNLALVFGPTLVR Variant 6TSEDNMTDMVTHMPDRYKIVETLIQHSDWFFSDEEDKGERILPPV SEQ ID NO: 146VQPSPRVRGPPRRSRTPGRCWRSPSSRPSTASARSGGRRGGWAA Rho 32METESESSTLGDDSVFWLESEVIIQVTDCEEEEREEKFRKMKSSVHor Rho GTPase-activating protein 32SEEDDFVPELHRNVHPRERPDWEETLSAMARGADVPEIPGDLTLK (ARHGAP32)TCGSTASMKVKHVKKLPFTKGHFPKMAECAHFHYENVEFGSIQLS SEQ ID NO: 147LSEEQNEVMKNGCESKELVYLVQIACQGKSWIVKRSYEDFRVLDKHLHLCIYDRRFSQLSELPRSDTLKDSPESVTQMLMAYLSRLSAIAGNKINCGPALTWMEIDNKGNHLLVHEESSINTPAVGAAHVIKRYTARAPDELTLEVGDIVSVIDMPPKVLSTWWRGKHGFQVGLFPGHCVELINQKVPQSVTNSVPKPVSKKHGKLITFLRTFMKSRPTKQKLKQRGILKERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGIVDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNHVDVLFSGRISMAMQEGAASLSRPKSLLVSSPSTKLLTLEEAQARTQAQVNSPIVTENKYIEVGEGPAALQGKFHTIIEFPLERKRPQNKMKKSPVGSWRSFFNLGKSSSVSKRKLQRNESEPSEMKAMALKGGRAEGTLRSAKSEESLTSLHAVDGDSKLFRPRRPRSSSDALSASFNGEMLGNRCNSYDNLPHDNESEEEGGLLHIPALMSPHSAEDVDLSPPDIGVASLDFDPMSFQCSPPKAESECLESGASFLDSPGYSKDKPSANKKDAETGSSQCQTPGSTASSEPVSPLQEKLSPFFTLDLSPTEDKSSKPSSFTEKVVYAFSPKIGRKLSKSPSMSISEPISVTLPPRVSEVIGTVSNTTAQNASSSTWDKCVEERDATNRSPTQIVKMKTNETVAQEAYESEVQPLDQVAAEEVELPGKEDQSVSSSQSKAVASGQTQTGAVTHDPPQDSVPVSSVSLIPPPPPPKNVARMLALALAESAQQASTQSLKRPGTSQAGYTNYGDIAVATTEDNLSSSYSAVALDKAYFQTDRPAEQFHLQNNAPGNCDHPLPETTATGDPTHSNTTESGEQHHQVDLTGNQPHQAYLSGDPEKARITSVPLDSEKSDDHVSFPEDQSGKNSMPTVSFLDQDQSPPRFYSGDQPPSYLGASVDKLHHPLEFADKSPTPPNLPSDKIYPPSGSPEENTSTATMTYMTTTPATAQMSTKEASWDVAEQPTTADFAAATLQRTHRTNRPLPPPPSQRSAEQPPVVGQVQAATNIGLNNSHKVQGVVPVPERPPEPRAMDDPASAFISDSGAAAAQCPMATAVQPGLPEKVRDGARVPLLHLRAESVPAHPCGFPAPLPPTRMMESKMIAAIHSSSADATSSSNYHSFVTASSTSVDDALPLPLPVPQPKHASQKTVYSSFARPDVTTEPFGPDNCLHFNMTPNCQYRPQSVPPHHNKLEQHQVYGARSEPPASMGLRYNTYVAPGRNASGHHSKPCSRVEYVSSLSSSVRNTCYPEDIPPYPTIRRVQSLHAPPSSMIRSVPISRTEVPPDDEPAYCPRPLYQYKPYQSSQARSDYHVTQLQPYFENGRVHYRYSPYSSSSSSYYSPDGALCDVDAYGTVQLRPLHRLPNRDFAFYNPRLQGKSLYSYAGLAPRPRANVTGYFSPNDHNVVSMPPAADVKHTYTSWDLEDMEKYRMQSIRRESRARQKVKGPVMSQYDNMTPAVQDDLGGIYVIHLRSKSDPGKTGLLSVAEGKESRHAAKAISPEGEDRFYRRHPEAEMDRAHHHGGHGSTQPEKPSLPQKQSSLRSRKLPDMGCSLPEHRAHQEASHRQFCESKNGPPYPQGAGQLDYGSKGIPDTSEPVSYHNSGVKYAASGQESLRLNHKEVRLSKEMERPWVRQPSAPEKHSRDCYKEEEHLTQSIVPPPKPERSHSLKLHHTQNVERDPSVLYQYQPHGKRQSSVTVVSQYDNLEDYHSLPQHQRGVFGGGGMGTYVPPGFPHPQSRTYATALGQGAFLPAELSLQHPETQIHAE

As used herein the terms “sequence identity” or “sequence homology,”which can be used interchangeably, refer to an exact amino acid-to-aminoacid correspondence of two polypeptide sequences. Typically, techniquesfor determining sequence identity include determining the amino acidsequence of a polypeptide, and comparing these sequences to a secondamino acid sequence. Two or more sequences can be compared bydetermining their “percent identity,” also referred to as “percenthomology.” The percent identity to a reference sequence, which may be asequence within a longer molecule, may be calculated as the number ofexact matches between two optimally aligned sequences divided by thelength of the reference sequence and multiplied by 100. Percent identitymay also be determined, for example, by comparing sequence informationusing the advanced BLAST computer program, including version 2.2.9,available from the National Institutes of Health. The BLAST program isbased on the alignment method of Karlin and Altschul, Proc. Natl. Acad.Sci. USA 87:2264-2268 (1990) and as discussed in Altschul, et al., J.Mol. Biol. 215:403-410 (1990); Karlin and Altschul, Proc. Natl. Acad.Sci. USA 90:5873-5877 (1993); and Altschul et al., Nucleic Acids Res.25:3389-3402 (1997). Briefly, the BLAST program defines identity as thenumber of identical aligned symbols (i.e., nucleotides or amino acids),divided by the total number of symbols in the shorter of the twosequences. The program may be used to determine percent identity overthe entire length of the sequences being compared. Default parametersare provided to optimize searches with short query sequences, forexample, with the blastp program. The program also allows use of an SEGfilter to mask-off segments of the query sequences as determined by theSEG program of Wootton and Federhen, Computers and Chemistry 17: 149-163(1993). Ranges of desired degrees of sequence identity are approximately80% to 100% and integer values in between. Percent identities between adisclosed sequence and a claimed sequence can be at least about 70%,71%, 72%, 73%, 74%, 75%, 76%, 77%, 78%, 79%, 80%, 81%, 82%, 83%, 84%,85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%,99%, or more, or complete (100%) sequence identity. In general, an exactmatch indicates 100% identity over the length of the reference sequence.In some cases, reference to percent sequence identity refers to sequenceidentity as measured using BLAST (Basic Local Alignment Search Tool). Inother cases, ClustalW can be used for multiple sequence alignment. Stillother programs for comparing sequences and/or assessing sequenceidentity include the Needleman-Wunsch algorithm and the Smith-Watermanalgorithm (see, e.g., the EMBOSS Water aligner. Optimal alignment may beassessed using any suitable parameters of a chosen algorithm, includingdefault parameters.

In one aspect, the sequence identity is at least about 70%, 71%, 72%,73%, 74%, 75%, 76%, 77%, 78%, 79%, 80%, 81%, 82%, 83%, 84%, 85%, 86%,87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%(complete) sequence identity (homology). In one aspect, the sequenceidentity is over a region of at least about 10, 50, 100, 150, 200, 250,300, 350, 400, 450, 500, 550, 600, 650, 700, 750, 800, 850, 900, 950,1000, 1100.1200, 1300, 1400, 1500, 1600, 1700, 1800, 1900, 2000, 2100,2200, 2300, 2400, 2500, 2600, 2700, 2800, 2900, 3000 or more aminoacids, or the full length of a polypeptide.

As used herein, the term “fragment” refers at least 10 consecutive aminoacids of a polypeptide that can be detected using methods known in theart. Fragment may refer to an “active” fragment which is a portion ofthe polypeptide required for polypeptide function. The fragment can bean “immunogenic” fragment which is a portion of the polypeptide whichbinds an antibody.

As used herein, a “sample” or “biological sample” is meant to refer toany “biological specimen” collected from a subject, and that isrepresentative of the content or composition of the source of thesample, considered in its entirety. A sample can be collected andprocessed directly for analysis, or be stored under proper storageconditions to maintain sample quality until analyses are completed.Ideally, a stored sample remains equivalent to a freshly-collectedspecimen. The source of the sample can be an internal organ, vein,artery, or even a fluid. Non-limiting examples of sample include blood,plasma, urine, saliva, sweat, organ biopsy, cerebrospinal fluid (CSF),tear, vaginal fluid, feces, skin, and hair. In one aspect, the sample isselected from the group consisting of blood, plasma, urine, saliva,sweat, organ biopsy, cerebrospinal fluid (CSF), tear, vaginal fluid,feces, skin, and hair. In certain aspects the sample is a blood sampleand the subject is human. Blood samples include whole blood, plasma andserum.

The at least one protein refers to one or more proteins. In an aspect,the at least one polypeptide comprises 1, 2, 3, 4, 5, 6, 7, 8, 9, 10,11, 12, 13, 14, 15, 16, 17, 18, 19, 20 or more proteins. In one aspectthe at least one protein is selected from the group consisting ofFarnesyl pyrophosphate synthase, neurofibromin I, Glyceraldehyde-3phosphate dehydrogenase, Protein 1 containing fibronectin domain typeIII, Eukaryotic initiation factor 4A-I, L-lactate dehydrogenase chain B,Nuclear heterogeneous Ribonucleoprotein A1, 1-like protein 1 polycystickidney disease, Heat Shock Protein Cognate 71 kDa, Ankyrin-3, Rho 23GTPase-activating protein, Cytoskeletal Keratin 78 type II, Alpha-3collagen chain (VI), Beta subunit of proteasome type-5, Heterogeneousnuclear ribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 or a fragment thereof. In another aspect,the at least one protein is selected from the group consisting of SEQ IDNO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6,SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9, SEQ ID NO:10, SEQ ID NO:11, SEQID NO:12, SEQ ID NO:13, SEQ ID NO:14, SEQ ID NO:15, SEQ ID NO:16, SEQ IDNO:17, SEQ ID NO:18, SEQ ID NO:19, SEQ ID NO:20, SEQ ID NO:21, SEQ IDNO:22, SEQ ID NO:23, SEQ ID NO:24, SEQ ID NO:25, SEQ ID NO:26, SEQ IDNO:27, SEQ ID NO:28, SEQ ID NO:29, SEQ ID NO:30, SEQ ID NO:31, SEQ IDNO:32, SEQ ID NO:33, SEQ ID NO:34, SEQ ID NO:35, SEQ ID NO:36, SEQ IDNO:37, SEQ ID NO:38, SEQ ID NO:39, SEQ ID NO:40, SEQ ID NO:41, SEQ IDNO:42, SEQ ID NO:43, SEQ ID NO:44, SEQ ID NO:45, SEQ ID NO:46, SEQ IDNO:47, SEQ ID NO:48, SEQ ID NO:49, SEQ ID NO:50, SEQ ID NO:51, SEQ IDNO:52, SEQ ID NO:53, SEQ ID NO:54, SEQ ID NO:55, SEQ ID NO:56, SEQ IDNO:57, SEQ ID NO:58, SEQ ID NO:59, SEQ ID NO:60, SEQ ID NO:61, SEQ IDNO:62, SEQ ID NO:63, SEQ ID NO:64, SEQ ID NO:65, SEQ ID NO:66, SEQ IDNO:67, SEQ ID NO:68, SEQ ID NO:69, SEQ ID NO:70, SEQ ID NO:71, SEQ IDNO:72, SEQ ID NO:73, SEQ ID NO:74, SEQ ID NO:75, SEQ ID NO:76, SEQ IDNO:77, SEQ ID NO:78, SEQ ID NO:79, SEQ ID NO:80, SEQ ID NO:81, SEQ IDNO:82, SEQ ID NO:83, SEQ ID NO:84, SEQ ID NO:85, SEQ ID NO:86, SEQ IDNO:87, SEQ ID NO:88, SEQ ID NO:89, SEQ ID NO:90, SEQ ID NO:91, SEQ IDNO:92, SEQ ID NO:93, SEQ ID NO:94, SEQ ID NO:95, SEQ ID NO:96, SEQ IDNO:97, SEQ ID NO:98, SEQ ID NO:99, SEQ ID NO:100, SEQ ID NO:101, SEQ IDNO:102, SEQ ID NO:103, SEQ ID NO:104, SEQ ID NO:105, SEQ ID NO:106, SEQID NO:107, SEQ ID NO:108, SEQ ID NO:109, SEQ ID NO:110, SEQ ID NO:111,SEQ ID NO:112, SEQ ID NO:113, SEQ ID NO:114, SEQ ID NO:115, SEQ IDNO:116, SEQ ID NO:117, SEQ ID NO:118, SEQ ID NO:119, SEQ ID NO:120, SEQID NO:121, SEQ ID NO:122, SEQ ID NO:123, SEQ ID NO:124, SEQ ID NO:125,SEQ ID NO:126, SEQ ID NO:127, SEQ ID NO:128, SEQ ID NO:129, SEQ IDNO:130, SEQ ID NO:131, SEQ ID NO:132, SEQ ID NO:133, SEQ ID NO:134, SEQID NO:135, SEQ ID NO:136, SEQ ID NO:137, SEQ ID NO:138, SEQ ID NO:139,SEQ ID NO:140, SEQ ID NO:141, SEQ ID NO:142, SEQ ID NO:143, SEQ IDNO:144, SEQ ID NO:145, SEQ ID NO:146, SEQ ID NO:147 or a fragmentthereof.

In one aspect the at least one protein is selected from the groupconsisting of Farnesyl pyrophosphate synthase, neurofibromin I,Glyceraldehyde-3 phosphate dehydrogenase, Protein 1 containingfibronectin domain type III, Eukaryotic initiation factor 4A-I,L-lactate dehydrogenase chain B, Nuclear heterogeneous RibonucleoproteinA1, 1-like protein 1 polycystic kidney disease, Heat Shock ProteinCognate 71 kDa, Ankyrin-3, Rho 23 GTPase-activating protein,Cytoskeletal Keratin 78 type II, Alpha-3 collagen chain (VI), Betasubunit of proteasome type-5, Heterogeneous nuclear ribonucleoproteinsA2/B1, Histone H2B type 1-B, homolog of DnaJ subfamily C member 13, Betaenolase, Glutathione S-transferase P, Glutathione S-transferase Mu 3 ora combination thereof. In another aspect, the at least one protein isselected from the group consisting of SEQ ID NO:1, SEQ ID NO:2, SEQ IDNO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8,SEQ ID NO:9, SEQ ID NO:10, SEQ ID NO:11, SEQ ID NO:12, SEQ ID NO:13, SEQID NO:14, SEQ ID NO:15, SEQ ID NO:16, SEQ ID NO:17, SEQ ID NO:18, SEQ IDNO:19, SEQ ID NO:20, SEQ ID NO:21, SEQ ID NO:22, SEQ ID NO:23, SEQ IDNO:24, SEQ ID NO:25, SEQ ID NO:26, SEQ ID NO:27, SEQ ID NO:28, SEQ IDNO:29, SEQ ID NO:30, SEQ ID NO:31, SEQ ID NO:32, SEQ ID NO:33, SEQ IDNO:34, SEQ ID NO:35, SEQ ID NO:36, SEQ ID NO:37, SEQ ID NO:38, SEQ IDNO:39, SEQ ID NO:40, SEQ ID NO:41, SEQ ID NO:42, SEQ ID NO:43, SEQ IDNO:44, SEQ ID NO:45, SEQ ID NO:46, SEQ ID NO:47, SEQ ID NO:48, SEQ IDNO:49, SEQ ID NO:50, SEQ ID NO:51, SEQ ID NO:52, SEQ ID NO:53, SEQ IDNO:54, SEQ ID NO:55, SEQ ID NO:56, SEQ ID NO:57, SEQ ID NO:58, SEQ IDNO:59, SEQ ID NO:60, SEQ ID NO:61, SEQ ID NO:62, SEQ ID NO:63, SEQ IDNO:64, SEQ ID NO:65, SEQ ID NO:66, SEQ ID NO:67, SEQ ID NO:68, SEQ IDNO:69, SEQ ID NO:70, SEQ ID NO:71, SEQ ID NO:72, SEQ ID NO:73, SEQ IDNO:74, SEQ ID NO:75, SEQ ID NO:76, SEQ ID NO:77, SEQ ID NO:78, SEQ IDNO:79, SEQ ID NO:80, SEQ ID NO:81, SEQ ID NO:82, SEQ ID NO:83, SEQ IDNO:84, SEQ ID NO:85, SEQ ID NO:86, SEQ ID NO:87, SEQ ID NO:88, SEQ IDNO:89, SEQ ID NO:90, SEQ ID NO:91, SEQ ID NO:92, SEQ ID NO:93, SEQ IDNO:94, SEQ ID NO:95, SEQ ID NO:96, SEQ ID NO:97, SEQ ID NO:98, SEQ IDNO:99, SEQ ID NO:100, SEQ ID NO:101, SEQ ID NO:102, SEQ ID NO:103, SEQID NO:104, SEQ ID NO:105, SEQ ID NO:106, SEQ ID NO:107, SEQ ID NO:108,SEQ ID NO:109, SEQ ID NO:110, SEQ ID NO:111, SEQ ID NO:112, SEQ IDNO:113, SEQ ID NO:114, SEQ ID NO:115, SEQ ID NO:116, SEQ ID NO:117, SEQID NO:118, SEQ ID NO:119, SEQ ID NO:120, SEQ ID NO:121, SEQ ID NO:122,SEQ ID NO:123, SEQ ID NO:124, SEQ ID NO:125, SEQ ID NO:126, SEQ IDNO:127, SEQ ID NO:128, SEQ ID NO:129, SEQ ID NO:130, SEQ ID NO:131, SEQID NO:132, SEQ ID NO:133, SEQ ID NO:134, SEQ ID NO:135, SEQ ID NO:136,SEQ ID NO:137, SEQ ID NO:138, SEQ ID NO:139, SEQ ID NO:140, SEQ IDNO:141, SEQ ID NO:142, SEQ ID NO:143, SEQ ID NO:144, SEQ ID NO:145, SEQID NO:146, SEQ ID NO:147 or a combination thereof.

The biomarkers of the present invention may be used individually or incombinations for the diagnosis of cervical cancer. Any combination ofthe biomarkers listed above and in Table 1 can be used for the diagnosisof cervical cancers.

In another aspect, the at least one polypeptide comprises Farnesylpyrophosphate synthase or fragment thereof and at least one polypeptideselected from neurofibromin I, Glyceraldehyde-3 phosphate dehydrogenase,Protein 1 containing fibronectin domain type III, Eukaryotic initiationfactor 4A-I, L-lactate dehydrogenase chain B, Nuclear heterogeneousRibonucleoprotein A1, 1-like protein 1 polycystic kidney disease, Heatshock protein cognate 71 kDa, Ankyrin-3, Rho 23 GTPase-activatingprotein, Cytoskeletal Keratin 78 type II, Alpha-3 collagen chain (VI),Beta subunit of proteasome type-5, Heterogeneous nuclearribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 or a fragment thereof. In an additionalaspect, the at least one polypeptide comprises a polypeptide having atleast about 70% sequence identity to a polypeptide having the amino acidsequence of SEQ ID NO:1 and at least one polypeptide selected from apolypeptide with at least about 70% sequence identity to a polypeptidehaving the amino acid sequence selected from SEQ ID NOs:2-20 or afragment thereof.

In one aspect, the at least one polypeptide comprises Farnesylpyrophosphate synthase and neurofibromin I; Farnesyl pyrophosphatesynthase and Glyceraldehyde-3 phosphate dehydrogenase; Farnesylpyrophosphate synthase and Protein 1 containing fibronectin domain typeIII; Farnesyl pyrophosphate synthase and Eukaryotic initiation factor4A-I; Farnesyl pyrophosphate synthase and L-lactate dehydrogenase chainB; Farnesyl pyrophosphate synthase and Nuclear heterogeneousRibonucleoprotein A1; Farnesyl pyrophosphate synthase and polycystickidney disease protein 1-like 1; Farnesyl pyrophosphate synthase andheat shock protein Cognate 71 kDa; Farnesyl pyrophosphate synthase andAnkyrin-3; Farnesyl pyrophosphate synthase and Rho 23; Farnesylpyrophosphate synthase and Rho 23-GTPase-activating protein; Farnesylpyrophosphate synthase and Cytoskeletal Keratin 78 type II; Farnesylpyrophosphate synthase and collagen chain (VI) Alpha-3; Farnesylpyrophosphate synthase and Beta subunit of proteasome type-5; Farnesylpyrophosphate synthase and Heterogeneous nuclear ribonucleoproteinsA2/B1; Farnesyl pyrophosphate synthase and Histone H2B type 1-B;Farnesyl pyrophosphate synthase and homolog of DnaJ subfamily C member13; Farnesyl pyrophosphate synthase and Beta enolase; Farnesylpyrophosphate synthase and Glutathione S-transferase P; Farnesylpyrophosphate synthase and Glutathione S-transferase Mu 3; or fragmentsthereof.

In another aspect, the at least one polypeptide comprises SEQ ID NO:1and SEQ ID NO:2; SEQ ID NO:1 and SEQ ID NO:3; SEQ ID NO:1 and SEQ IDNO:4; SEQ ID NO:1 and SEQ ID NO:5; SEQ ID NO:1 and SEQ ID NO:6; SEQ IDNO:1 and SEQ ID NO:7; SEQ ID NO:1 and SEQ ID NO:8; SEQ ID NO:1 and SEQID NO:9; SEQ ID NO:1 and SEQ ID NO:10; SEQ ID NO:1 and SEQ ID NO:11; SEQID NO:1 and SEQ ID NO:12; SEQ ID NO:1 and SEQ ID NO:13; SEQ ID NO:1 andSEQ ID NO:14; SEQ ID NO:1 and SEQ ID NO:15; SEQ ID NO:1 and SEQ IDNO:16; SEQ ID NO:1 and SEQ ID NO:17; SEQ ID NO:1 and SEQ ID NO:18; SEQID NO:1 and SEQ ID NO:19; SEQ ID NO:1 and SEQ ID NO:20; or fragmentsthereof.

In one aspect, the at least one polypeptide comprises Farnesylpyrophosphate synthase or a fragment thereof, neurofibromin or afragment thereof, and at least one additional polypeptide selected fromthe group consisting of Glyceraldehyde-3 phosphate dehydrogenase,Protein 1 containing fibronectin domain type III, Eukaryotic initiationfactor 4A-I, L-lactate dehydrogenase chain B, Nuclear heterogeneousRibonucleoprotein A1, 1-like protein 1 polycystic kidney disease, HeatShock Protein Cognate 71 kDa, Ankyrin-3, Rho 23 GTPase-activatingprotein, Cytoskeletal Keratin 78 type II, Alpha-3 collagen chain (VI),Beta subunit of proteasome type-5, Heterogeneous nuclearribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 and a fragment thereof.

In another aspect, the at least one polypeptide comprises Farnesylpyrophosphate synthase or a fragment thereof, Glyceraldehyde-3 phosphatedehydrogenase or a fragment thereof, and at least one additionalpolypeptide selected from the group consisting of neurofibromin, Protein1 containing fibronectin domain type III, Eukaryotic initiation factor4A-I, L-lactate dehydrogenase chain B, Nuclear heterogeneousRibonucleoprotein A1, polycystic kidney disease protein 1-like 1, heatshock protein Cognate 71 kDa, Ankyrin-3, Rho 23 GTPase-activatingprotein, Cytoskeletal Keratin 78 type II, collagen chain (VI) Alpha-3,Beta subunit of proteasome type-5, Heterogeneous nuclearribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 and a fragment thereof.

In one aspect, the at least one polypeptide comprises Farnesylpyrophosphate synthase or a fragment thereof, Protein 1 containingfibronectin domain type III or a fragment thereof, and at least oneadditional polypeptide selected from the group consisting ofneurofibromin, Glyceraldehyde-3 phosphate dehydrogenase, Eukaryoticinitiation factor 4A-I, L-lactate dehydrogenase chain B, Nuclearheterogeneous Ribonucleoprotein A1, polycystic kidney disease protein1-like 1, heat shock protein Cognate 71 kDa, Ankyrin-3, Rho 23GTPase-activating protein, Cytoskeletal Keratin 78 type II, collagenchain (VI) Alpha-3, Beta subunit of proteasome type-5, Heterogeneousnuclear ribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 and a fragment thereof.

In another aspect, the at least one polypeptide comprises Farnesylpyrophosphate synthase or a fragment thereof, Eukaryotic initiationfactor 4A-I or a fragment thereof, and at least one additionalpolypeptide selected from the group consisting of neurofibromin,Glyceraldehyde-3 phosphate dehydrogenase, Protein 1 containingfibronectin domain type III, L-lactate dehydrogenase chain B, Nuclearheterogeneous Ribonucleoprotein A1, polycystic kidney disease protein1-like 1, heat shock protein Cognate 71 kDa, Ankyrin-3, Rho 23GTPase-activating protein, Cytoskeletal Keratin 78 type II, collagenchain (VI) Alpha-3, Beta subunit of proteasome type-5, Heterogeneousnuclear ribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P, andGlutathione S-transferase Mu 3 and a fragment thereof.

In one aspect, the at least one polypeptide comprises Farnesylpyrophosphate synthase or a fragment thereof, L-lactate dehydrogenasechain B or a fragment thereof, and at least one additional polypeptideselected from the group consisting of neurofibromin, Glyceraldehyde-3phosphate dehydrogenase, Protein 1 containing fibronectin domain typeIII, Eukaryotic initiation factor 4A-I, Nuclear heterogeneousRibonucleoprotein A1, polycystic kidney disease protein 1-like 1, heatshock protein Cognate 71 kDa, Ankyrin-3, Rho 23 GTPase-activatingprotein, Cytoskeletal Keratin 78 type II, collagen chain (VI) Alpha-3,Beta subunit of proteasome type-5, Heterogeneous nuclearribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 and a fragment thereof.

In another aspect, the at least one polypeptide comprises Farnesylpyrophosphate synthase or a fragment thereof, Nuclear heterogeneousRibonucleoprotein A1 or a fragment thereof, and at least one additionalpolypeptide selected from the group consisting of neurofibromin,Glyceraldehyde-3 phosphate dehydrogenase, Protein 1 containingfibronectin domain type III, Eukaryotic initiation factor 4A-I,L-lactate dehydrogenase chain B, polycystic kidney disease protein1-like 1, heat shock protein Cognate 71 kDa, Ankyrin-3, Rho 23GTPase-activating protein, Cytoskeletal Keratin 78 type II, collagenchain (VI) Alpha-3, Beta subunit of proteasome type-5, Heterogeneousnuclear ribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 and a fragment thereof.

In one aspect, the at least one polypeptide comprises Farnesylpyrophosphate synthase or a fragment thereof, polycystic kidney diseaseprotein 1-like 1 or a fragment thereof, and at least one additionalpolypeptide selected from the group consisting of neurofibromin,Glyceraldehyde-3 phosphate dehydrogenase, Protein 1 containingfibronectin domain type III, Eukaryotic initiation factor 4A-I,L-lactate dehydrogenase chain B, Nuclear heterogeneous RibonucleoproteinA1, heat shock protein Cognate 71 kDa, Ankyrin-3, Rho 23GTPase-activating protein, Cytoskeletal Keratin 78 type II, collagenchain (VI) Alpha-3, Beta subunit of proteasome type-5, Heterogeneousnuclear ribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 and a fragment thereof.

In another aspect, the at least one polypeptide comprises Farnesylpyrophosphate synthase or a fragment thereof, heat shock protein Cognate71 kDa or a fragment thereof, and at least one additional polypeptideselected from the group consisting of neurofibromin, Glyceraldehyde-3phosphate dehydrogenase, Protein 1 containing fibronectin domain typeIII, Eukaryotic initiation factor 4A-I, L-lactate dehydrogenase chain B,Nuclear heterogeneous Ribonucleoprotein A1, polycystic kidney diseaseprotein 1-like 1, Ankyrin-3, Rho 23 GTPase-activating protein,Cytoskeletal Keratin 78 type II, collagen chain (VI) Alpha-3, Betasubunit of proteasome type-5, Heterogeneous nuclear ribonucleoproteinsA2/B1, Histone H2B type 1-B, homolog of DnaJ subfamily C member 13, Betaenolase, Glutathione S-transferase P, Glutathione S-transferase Mu 3 anda fragment thereof.

In one aspect, the at least one polypeptide comprises Farnesylpyrophosphate synthase or a fragment thereof, Ankyrin-3 or a fragmentthereof, and at least one additional polypeptide selected from the groupconsisting of neurofibromin, Glyceraldehyde-3 phosphate dehydrogenase,Protein 1 containing fibronectin domain type III, Eukaryotic initiationfactor 4A-I, L-lactate dehydrogenase chain B, Nuclear heterogeneousRibonucleoprotein A1, polycystic kidney disease protein 1-like 1, heatshock protein Cognate 71 kDa, Rho 23 GTPase-activating protein,Cytoskeletal Keratin 78 type II, collagen chain (VI) Alpha-3, Betasubunit of proteasome type-5, Heterogeneous nuclear ribonucleoproteinsA2/B1, Histone H2B type 1-B, homolog of DnaJ subfamily C member 13, Betaenolase, Glutathione S-transferase P, Glutathione S-transferase Mu 3 anda fragment thereof.

In another aspect, the at least one polypeptide comprises Farnesylpyrophosphate synthase or a fragment thereof, Rho 23 GTPase-activatingprotein or a fragment thereof, and at least one additional polypeptideselected from the group consisting of neurofibromin, Glyceraldehyde-3phosphate dehydrogenase, Protein 1 containing fibronectin domain typeIII, Eukaryotic initiation factor 4A-I, L-lactate dehydrogenase chain B,Nuclear heterogeneous Ribonucleoprotein A1, polycystic kidney diseaseprotein 1-like 1, heat shock protein Cognate 71 kDa, Ankyrin-3,Cytoskeletal Keratin 78 type II, collagen chain (VI) Alpha-3, Betasubunit of proteasome type-5, Heterogeneous nuclear ribonucleoproteinsA2/B1, Histone H2B type 1-B, homolog of DnaJ subfamily C member 13, Betaenolase, Glutathione S-transferase P, Glutathione S-transferase Mu 3 anda fragment thereof.

In one aspect, the at least one polypeptide comprises Farnesylpyrophosphate synthase or a fragment thereof, Cytoskeletal Keratin 78type II or a fragment thereof, and at least one additional polypeptideselected from the group consisting of neurofibromin, Glyceraldehyde-3phosphate dehydrogenase, Protein 1 containing fibronectin domain typeIII, Eukaryotic initiation factor 4A-I, L-lactate dehydrogenase chain B,Nuclear heterogeneous Ribonucleoprotein A1, polycystic kidney diseaseprotein 1-like 1, heat shock protein Cognate 71 kDa, Ankyrin-3, Rho 23GTPase-activating protein, collagen chain (VI) Alpha-3, Beta subunit ofproteasome type-5, Heterogeneous nuclear ribonucleoproteins A2/B1,Histone H2B type 1-B, homolog of DnaJ subfamily C member 13, Betaenolase, Glutathione S-transferase P, Glutathione S-transferase Mu 3 anda fragment thereof.

In another aspect, the at least one polypeptide comprises Farnesylpyrophosphate synthase or a fragment thereof, collagen chain (VI)Alpha-3 or a fragment thereof, and at least one additional polypeptideselected from the group consisting of neurofibromin, Glyceraldehyde-3phosphate dehydrogenase, Protein 1 containing fibronectin domain typeIII, Eukaryotic initiation factor 4A-I, L-lactate dehydrogenase chain B,Nuclear heterogeneous Ribonucleoprotein A1, polycystic kidney diseaseprotein 1-like 1, heat shock protein Cognate 71 kDa, Ankyrin-3, Rho 23GTPase-activating protein, Cytoskeletal Keratin 78 type II, Beta subunitof proteasome type-5, Heterogeneous nuclear ribonucleoproteins A2/B1,Histone H2B type 1-B, homolog of DnaJ subfamily C member 13, Betaenolase, Glutathione S-transferase P, Glutathione S-transferase Mu 3 anda fragment thereof.

In one aspect, the at least one polypeptide comprises Farnesylpyrophosphate synthase or a fragment thereof, Beta subunit of proteasometype-5 or a fragment thereof, and at least one additional polypeptideselected from the group consisting of neurofibromin, Glyceraldehyde-3phosphate dehydrogenase, Protein 1 containing fibronectin domain typeIII, Eukaryotic initiation factor 4A-I, L-lactate dehydrogenase chain B,Nuclear heterogeneous Ribonucleoprotein A1, polycystic kidney diseaseprotein 1-like 1, heat shock protein Cognate 71 kDa, Ankyrin-3, Rho 23GTPase-activating protein, Cytoskeletal Keratin 78 type II, collagenchain (VI) Alpha-3, Heterogeneous nuclear ribonucleoproteins A2/B1,Histone H2B type 1-B, homolog of DnaJ subfamily C member 13, Betaenolase, Glutathione S-transferase P, Glutathione S-transferase Mu 3 anda fragment thereof.

In another aspect, the at least one polypeptide comprises Farnesylpyrophosphate synthase or a fragment thereof, Heterogeneous nuclearribonucleoproteins A2/B1 or a fragment thereof, and at least oneadditional polypeptide selected from the group consisting ofneurofibromin, Glyceraldehyde-3 phosphate dehydrogenase, Protein 1containing fibronectin domain type III, Eukaryotic initiation factor4A-I, L-lactate dehydrogenase chain B, Nuclear heterogeneousRibonucleoprotein A1, polycystic kidney disease protein 1-like 1, heatshock protein Cognate 71 kDa, Ankyrin-3, Rho 23 GTPase-activatingprotein, Cytoskeletal Keratin 78 type II, collagen chain (VI) Alpha-3,Beta subunit of proteasome type-5, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 and a fragment thereof.

In one aspect, the at least one polypeptide comprises Farnesylpyrophosphate synthase or a fragment thereof, Histone H2B type 1-B or afragment thereof, and at least one additional polypeptide selected fromthe group consisting of neurofibromin, Glyceraldehyde-3 phosphatedehydrogenase, Protein 1 containing fibronectin domain type III,Eukaryotic initiation factor 4A-I, L-lactate dehydrogenase chain B,Nuclear heterogeneous Ribonucleoprotein A1, polycystic kidney diseaseprotein 1-like 1, heat shock protein Cognate 71 kDa, Ankyrin-3, Rho 23GTPase-activating protein, Cytoskeletal Keratin 78 type II, collagenchain (VI) Alpha-3, Beta subunit of proteasome type-5, Heterogeneousnuclear ribonucleoproteins A2/B1, homolog of DnaJ subfamily C member 13,Beta enolase, Glutathione S-transferase P, Glutathione S-transferase Mu3 and a fragment thereof.

In another aspect, the at least one polypeptide comprises Farnesylpyrophosphate synthase or a fragment thereof, homolog of DnaJ subfamilyC member 13 or a fragment thereof, and at least one additionalpolypeptide selected from the group consisting of neurofibromin,Glyceraldehyde-3 phosphate dehydrogenase, Protein 1 containingfibronectin domain type III, Eukaryotic initiation factor 4A-I,L-lactate dehydrogenase chain B, Nuclear heterogeneous RibonucleoproteinA1, polycystic kidney disease protein 1-like 1, heat shock proteinCognate 71 kDa, Ankyrin-3, Rho 23 GTPase-activating protein,Cytoskeletal Keratin 78 type II, collagen chain (VI) Alpha-3, Betasubunit of proteasome type-5, Heterogeneous nuclear ribonucleoproteinsA2/B1, Histone H2B type 1-B, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 and a fragment thereof.

In one aspect, the at least one polypeptide comprises Farnesylpyrophosphate synthase or a fragment thereof, Beta enolase or a fragmentthereof, and at least one additional polypeptide selected from the groupconsisting of neurofibromin, Glyceraldehyde-3 phosphate dehydrogenase,Protein 1 containing fibronectin domain type III, Eukaryotic initiationfactor 4A-I, L-lactate dehydrogenase chain B, Nuclear heterogeneousRibonucleoprotein A1, polycystic kidney disease protein 1-like 1, heatshock protein Cognate 71 kDa, Ankyrin-3, Rho 23 GTPase-activatingprotein, Cytoskeletal Keratin 78 type II, collagen chain (VI) Alpha-3,Beta subunit of proteasome type-5, Heterogeneous nuclearribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Glutathione S-transferase P, GlutathioneS-transferase Mu 3 and a fragment thereof.

In another aspect, the at least one polypeptide comprises Farnesylpyrophosphate synthase or a fragment thereof, Glutathione S-transferaseP or a fragment thereof, and at least one additional polypeptideselected from the group consisting of neurofibromin, Glyceraldehyde-3phosphate dehydrogenase, Protein 1 containing fibronectin domain typeIII, Eukaryotic initiation factor 4A-I, L-lactate dehydrogenase chain B,Nuclear heterogeneous Ribonucleoprotein A1, polycystic kidney diseaseprotein 1-like 1, heat shock protein Cognate 71 kDa, Ankyrin-3, Rho 23GTPase-activating protein, Cytoskeletal Keratin 78 type II, collagenchain (VI) Alpha-3, Beta subunit of proteasome type-5, Heterogeneousnuclear ribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase Mu 3 anda fragment thereof.

In one aspect, the at least one polypeptide comprises Farnesylpyrophosphate synthase or a fragment thereof, Glutathione S-transferaseMu 3 or a fragment thereof, and at least one additional polypeptideselected from the group consisting of neurofibromin, Glyceraldehyde-3phosphate dehydrogenase, Protein 1 containing fibronectin domain typeIII, Eukaryotic initiation factor 4A-I, L-lactate dehydrogenase chain B,Nuclear heterogeneous Ribonucleoprotein A1, polycystic kidney diseaseprotein 1-like 1, heat shock protein Cognate 71 kDa, Ankyrin-3, Rho 23GTPase-activating protein, Cytoskeletal Keratin 78 type II, collagenchain (VI) Alpha-3, Beta subunit of proteasome type-5, Heterogeneousnuclear ribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P and afragment thereof.

In one aspect, the at least one polypeptide comprises a polypeptide withat least about 70% sequence identity to a polypeptide having the aminoacid sequence of SEQ ID NO:1 or a fragment thereof, and a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence of SEQ ID NO:2 or a fragment thereof, and at leastone additional polypeptide having at least about 70% sequence identityto a polypeptide having an amino acid sequence selected from the groupconsisting of SEQ ID NOs:3-20 and a fragment thereof.

In another aspect, the at least one polypeptide comprises a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence of SEQ ID NO:1 or a fragment thereof, and apolypeptide with at least about 70% sequence identity to a polypeptidehaving the amino acid sequence of SEQ ID NO:3 or a fragment thereof, andat least one additional polypeptide having at least about 70% sequenceidentity to a polypeptide an amino acid sequence selected from the groupconsisting of SEQ ID NOs:2 and 4-20 and a fragment thereof.

In one aspect, the at least one polypeptide comprises a polypeptide withat least about 70% sequence identity to a polypeptide having the aminoacid sequence of SEQ ID NO:1 or a fragment thereof, and a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence of SEQ ID NO:4 or a fragment thereof, and at leastone additional polypeptide having at least about 70% sequence identityto a polypeptide an amino acid sequence selected from the groupconsisting of SEQ ID NOs:2-3 and 5-20 and a fragment thereof.

In another aspect, the at least one polypeptide comprises a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence of SEQ ID NO:1 or a fragment thereof, and apolypeptide with at least about 70% sequence identity to a polypeptidehaving the amino acid sequence of SEQ ID NO:5 or a fragment thereof, andat least one additional polypeptide having at least about 70% sequenceidentity to a polypeptide an amino acid sequence selected from the groupconsisting of SEQ ID NOs:2-4 and 6-20 and a fragment thereof.

In one aspect, the at least one polypeptide comprises a polypeptide withat least about 70% sequence identity to a polypeptide having the aminoacid sequence of SEQ ID NO:1 or a fragment thereof, and a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence of SEQ ID NO:6 or a fragment thereof, and at leastone additional polypeptide having at least about 70% sequence identityto a polypeptide an amino acid sequence selected from the groupconsisting of SEQ ID NOs:2-5 and 7-20 and a fragment thereof.

In another aspect, the at least one polypeptide comprises a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence of SEQ ID NO:1 or a fragment thereof, and apolypeptide with at least about 70% sequence identity to a polypeptidehaving the amino acid sequence of SEQ ID NO:7 or a fragment thereof, andat least one additional polypeptide having at least about 70% sequenceidentity to a polypeptide an amino acid sequence selected from the groupconsisting of SEQ ID NOs:2-6 and 8-20 and a fragment thereof.

In one aspect, the at least one polypeptide comprises a polypeptide withat least about 70% sequence identity to a polypeptide having the aminoacid sequence of SEQ ID NO:1 or a fragment thereof, and a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence of SEQ ID NO:8 or a fragment thereof, and at leastone additional polypeptide having at least about 70% sequence identityto a polypeptide an amino acid sequence selected from the groupconsisting of SEQ ID NOs:2-7 and 9-20 and a fragment thereof.

In another aspect, the at least one polypeptide comprises a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence of SEQ ID NO:1 or a fragment thereof, and apolypeptide with at least about 70% sequence identity to a polypeptidehaving the amino acid sequence of SEQ ID NO:9 or a fragment thereof, andat least one additional polypeptide having at least about 70% sequenceidentity to a polypeptide an amino acid sequence selected from the groupconsisting of SEQ ID NOs:2-8 and 10-20 and a fragment thereof.

In one aspect, the at least one polypeptide comprises a polypeptide withat least about 70% sequence identity to a polypeptide having the aminoacid sequence of SEQ ID NO:1 or a fragment thereof, and a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence of SEQ ID NO:10 or a fragment thereof, and at leastone additional polypeptide having at least about 70% sequence identityto a polypeptide an amino acid sequence selected from the groupconsisting of SEQ ID NOs:2-9 and 11-20 and a fragment thereof.

In another aspect, the at least one polypeptide comprises a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence of SEQ ID NO:1 or a fragment thereof, and apolypeptide with at least about 70% sequence identity to a polypeptidehaving the amino acid sequence of SEQ ID NO:11 or a fragment thereof,and at least one additional polypeptide having at least about 70%sequence identity to a polypeptide an amino acid sequence selected fromthe group consisting of SEQ ID NOs:2-10 and 12-20 and a fragmentthereof.

In one aspect, the at least one polypeptide comprises a polypeptide withat least about 70% sequence identity to a polypeptide having the aminoacid sequence of SEQ ID NO:1 or a fragment thereof, and a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence of SEQ ID NO:12 or a fragment thereof, and at leastone additional polypeptide having at least about 70% sequence identityto a polypeptide an amino acid sequence selected from the groupconsisting of SEQ ID NOs:2-11 and 13-20 and a fragment thereof.

In another aspect, the at least one polypeptide comprises a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence of SEQ ID NO:1 or a fragment thereof, and apolypeptide with at least about 70% sequence identity to a polypeptidehaving the amino acid sequence of SEQ ID NO:13 or a fragment thereof,and at least one additional polypeptide having at least about 70%sequence identity to a polypeptide an amino acid sequence selected fromthe group consisting of SEQ ID NOs:2-12 and 14-20 and a fragmentthereof.

In one aspect, the at least one polypeptide comprises a polypeptide withat least about 70% sequence identity to a polypeptide having the aminoacid sequence of SEQ ID NO:1 or a fragment thereof, and a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence of SEQ ID NO:14 or a fragment thereof, and at leastone additional polypeptide having at least about 70% sequence identityto a polypeptide an amino acid sequence selected from the groupconsisting of SEQ ID NOs:2-13 and 15-20 and a fragment thereof.

In another aspect, the at least one polypeptide comprises a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence of SEQ ID NO:1 or a fragment thereof, and apolypeptide with at least about 70% sequence identity to a polypeptidehaving the amino acid sequence of SEQ ID NO:15 or a fragment thereof,and at least one additional polypeptide having at least about 70%sequence identity to a polypeptide an amino acid sequence selected fromthe group consisting of SEQ ID NOs:2-14 and 16-20 and a fragmentthereof.

In one aspect, the at least one polypeptide comprises a polypeptide withat least about 70% sequence identity to a polypeptide having the aminoacid sequence of SEQ ID NO:1 or a fragment thereof, and a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence of SEQ ID NO:16 or a fragment thereof, and at leastone additional polypeptide having at least about 70% sequence identityto a polypeptide an amino acid sequence selected from the groupconsisting of SEQ ID NOs:2-15 and 17-20 and a fragment thereof.

In another aspect, the at least one polypeptide comprises a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence of SEQ ID NO:1 or a fragment thereof, and apolypeptide with at least about 70% sequence identity to a polypeptidehaving the amino acid sequence of SEQ ID NO:17 or a fragment thereof,and at least one additional polypeptide having at least about 70%sequence identity to a polypeptide an amino acid sequence selected fromthe group consisting of SEQ ID NOs:2-16 and 18-20 and a fragmentthereof.

In one aspect, the at least one polypeptide comprises a polypeptide withat least about 70% sequence identity to a polypeptide having the aminoacid sequence of SEQ ID NO:1 or a fragment thereof, and a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence of SEQ ID NO:18 or a fragment thereof, and at leastone additional polypeptide having at least about 70% sequence identityto a polypeptide an amino acid sequence selected from the groupconsisting of SEQ ID NOs:2-17 and 19-20 and a fragment thereof.

In another aspect, the at least one polypeptide comprises a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence of SEQ ID NO:1 or a fragment thereof, and apolypeptide with at least about 70% sequence identity to a polypeptidehaving the amino acid sequence of SEQ ID NO:19 or a fragment thereof,and at least one additional polypeptide having at least about 70%sequence identity to a polypeptide an amino acid sequence selected fromthe group consisting of SEQ ID NOs:2-18 and 20 and a fragment thereof.

In one aspect, the at least one polypeptide comprises a polypeptide withat least about 70% sequence identity to a polypeptide having the aminoacid sequence of SEQ ID NO:1 or a fragment thereof, and a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence of SEQ ID NO:20 or a fragment thereof, and at leastone additional polypeptide having at least about 70% sequence identityto a polypeptide an amino acid sequence selected from the groupconsisting of SEQ ID NOs:2-19 and a fragment thereof.

In a further aspect, the detecting is by protein microarray,fluorescence detection, flow cytometry, microfluidic device, lateralflow assay, vertical flow assay or immunoassay. In a specific aspect,the detecting is by lateral flow.

In one aspect, the method also includes administering a treatment to thesubject. In an additional aspect, the treatment is surgery, radiation,chemotherapy, targeted therapy and/or immunotherapy.

The term “treatment” is used interchangeably herein with the term“therapeutic method” and refers to both 1) therapeutic treatments ormeasures that cure, slow down, lessen symptoms of, and/or haltprogression of a diagnosed pathologic conditions or disorder, and 2) andprophylactic/preventative measures. Those in need of treatment mayinclude individuals already having a particular medical disorder as wellas those who may ultimately acquire the disorder (i.e., those needingpreventive measures).

The terms “therapeutically effective amount”, “effective dose,”“therapeutically effective dose”, “effective amount,” or the like referto that amount of the subject compound that will elicit the biologicalor medical response of a tissue, system, animal or human that is beingsought by the researcher, veterinarian, medical doctor or otherclinician.

The terms “administration of” and or “administering” should beunderstood to mean providing a pharmaceutical composition in atherapeutically effective amount to the subject in need of treatment.Administration routes can be enteral, topical or parenteral. As such,administration routes include but are not limited to intracutaneous,subcutaneous, intravenous, intraperitoneal, intraarterial, intrathecal,intracapsular, intraorbital, intracardiac, intradermal, transdermal,transtracheal, subcuticular, intraarticulare, subcapsular, subarachnoid,intraspinal and intrasternal, oral, sublingual buccal, rectal, vaginal,nasal ocular administrations, as well infusion, inhalation, andnebulization. The phrases “parenteral administration” and “administeredparenterally” as used herein means modes of administration other thanenteral and topical administration. The pharmaceutical compositions canbe administered in a variety of unit dosage forms depending upon themethod of administration. Suitable unit dosage forms, include, but arenot limited to powders, tablets, pills, capsules, lozenges,suppositories, patches, nasal sprays, injectables, implantablesustained-release formulations, lipid complexes, etc.

The biomarkers and polypeptides disclosed herein are useful for thediagnosis of cervical cancer. As used herein, the term “diagnosis”refers to any method of detecting or determining that a subject hascervical cancer.

In another embodiment, the present invention provides a method ofdiagnosing cervical cancer in a subject by detecting at least onepolypeptide in a sample from a subject; wherein the at least onepolypeptide is selected from Farnesyl pyrophosphate synthase,neurofibromin 1, Glyceraldehyde-3 phosphate dehydrogenase, Protein 1containing fibronectin domain type III, Eukaryotic initiation factor4A-I, L-lactate dehydrogenase chain B, Nuclear heterogeneousRibonucleoprotein A1, 1-like protein 1 polycystic kidney disease, Heatshock protein cognate protein 71 kDa, Ankyrin-3, Rho 23GTPase-activating protein, Cytoskeletal Keratin 78 type II, Alpha-3collagen chain (VI), Beta subunit of proteasome type-5, Heterogeneousnuclear ribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 or a fragment thereof, or a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence to a polypeptide having the amino acid sequenceselected from SEQ ID NOs: 1-147 or a fragment thereof, and diagnosingcervical cancer based on the detection of at least one polypeptide. Inone aspect, the at least one polypeptide is a polypeptide with at leastabout 70% sequence identity to a polypeptide having the amino acidsequence selected from SEQ ID NOs:1-20 or a fragment thereof.

In one aspect, the sample is blood, plasma, urine, saliva, sweat, organbiopsy, cerebrospinal fluid (CSF), tear, vaginal fluid, feces, skin, andhair. In certain aspects, the sample is a blood sample and the subjectis human.

In an additional aspect, the at least one polypeptide is selected isFarnesyl pyrophosphate synthase or a fragment thereof and at least onepolypeptide selected from neurofibromin I, Glyceraldehyde-3 phosphatedehydrogenase, Protein 1 containing fibronectin domain type III,Eukaryotic initiation factor 4A-I, L-lactate dehydrogenase chain B,Nuclear heterogeneous Ribonucleoprotein A1, 1-like protein 1 polycystickidney disease, Cognate thermal shock protein 71 kDa, Ankyrin-3, Rho 23GTPase-activating protein, Cytoskeletal Keratin 78 type II, Alpha-3collagen chain (VI), Beta subunit of proteasome type-5, Heterogeneousnuclear ribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 or a fragment thereof. In a furtheraspect, the at least one polypeptide is a polypeptide with at leastabout 70% sequence identity to a polypeptide having the amino acidsequence of SEQ ID NO:1 or a fragment thereof and at least onepolypeptide with at least about 70% sequence identity to a polypeptidehaving an amino acid sequence selected from SEQ ID NOs:2-20 or afragment there of.

In another aspect, the detecting is by protein microarray, fluorescencedetection, flow cytometry, microfluidic device, lateral flow assay,vertical flow assay or immunoassay. In a specific aspect, the detectingis by lateral flow. In one aspect, the method also includesadministering a treatment to the subject. In certain aspects, thetreatment is surgery, radiation, chemotherapy, targeted therapy and/orimmunotherapy.

In some embodiments, diagnosing, predicting, and/or monitoring thestatus or outcome of a cancer may comprise determining a therapeuticregimen. Determining a therapeutic regimen may comprise administering ananti-cancer therapeutic. Alternatively, determining the treatment forthe cancer may comprise modifying a therapeutic regimen. Modifying atherapeutic regimen may comprise increasing, decreasing, or terminatinga therapeutic regimen.

Treatment options for cervical cancer include surgery, radiation,chemotherapy, targeted therapy, and immunotherapy.

Surgical Treatment for cervical cancer depends on the type and stage ofcervical cancer. For precancerous lesion surgical interventions includeablation and excision surgery. Surgical intervention for advancedcervical cancer include hysterectomy (simple or radical) andTrachelectomy.

Radiation is used to treat cervical cancer and to treat cervical cancerrecurrence. There are two types of radiation typically used for treatingcervical cancer, external beam radiation and brachytherapy. Externalbeam radiation therapy (EBRT) aims x-rays at the cancer from a machineoutside the body. Treatment is much like getting a regular x-ray, butthe radiation dose is stronger. When EBRT is used as the main treatmentfor cervical cancer, it is usually combined with chemotherapy.Brachytherapy, or internal radiation therapy, puts a source of radiationin or near the cancer. Brachytherapy is mainly used in addition to EBRTas a part of the main treatment for cervical cancer.

Chemotherapy is also used to treat cervical cancer, wither alone or incombination with another method. Chemotherapy may include Cisplatin,Carboplatin, Paclitaxel (Taxol), Topotecan, docetaxel (Taxotere),ifosfamide (Ifex), 5-fluorouracil (5-FU), irinotecan (Camptosar),gemcitabine (Gemzar) and mitomycin. Targeted therapy for the treatmentof cervical cancer includes Bevacizumab. Immunotherapy for the treatmentof cervical cancer includes Pembrolizumab (PD-1 inhibitor).

In an additional embodiment, the present invention provides a method oftreating cervical cancer in a subject in need thereof, the method isdetecting at least one polypeptide in a sample from a subject; whereinthe at least one polypeptide is selected from Farnesyl pyrophosphatesynthase, neurofibromin I, Glyceraldehyde-3 phosphate dehydrogenase,Protein 1 containing fibronectin domain type III, Eukaryotic initiationfactor 4A-I, L-lactate dehydrogenase chain B, Nuclear heterogeneousRibonucleoprotein A1, 1-like protein 1 polycystic kidney disease, Heatshock protein cognate 71 kDa, Ankyrin-3, Rho 23 GTPase-activatingprotein, Cytoskeletal Keratin 78 type II, Alpha-3 collagen chain (VI),Beta subunit of proteasome type-5, Heterogeneous nuclearribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 or a fragment thereof; or a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence selected from the group consisting of SEQ ID NOs:1-147 or a fragment thereof; diagnosing cervical cancer based on thedetection of the at least one polypeptide; and administering a treatmentto the subject. In one aspect, the sample is a blood sample. In oneaspect, the at least one polypeptide is a polypeptide with at leastabout 70% sequence identity to a polypeptide having the amino acidsequence selected from SEQ ID NOs:1-20 or a fragment thereof.

In an additional aspect, the at least one polypeptide is Farnesylpyrophosphate synthase and at least one polypeptide selected fromneurofibromin I, Glyceraldehyde-3 phosphate dehydrogenase, Protein 1containing fibronectin domain type III, Eukaryotic initiation factor4A-I, L-lactate dehydrogenase chain B, Nuclear heterogeneousRibonucleoprotein A1, 1-like protein 1 polycystic kidney disease, Heatshock protein cognate 71 kDa, Ankyrin-3, Rho 23 GTPase-activatingprotein, Cytoskeletal Keratin 78 type II, Alpha-3 collagen chain (VI),Beta subunit of proteasome type-5, Heterogeneous nuclearribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 or a fragment thereof. In a furtherembodiment, the at least one polypeptides is a polypeptide with at leastabout 70% sequence identity to a polypeptide having the amino acidsequence of SEQ ID NO:1 or a fragment thereof and at least onepolypeptide with at least about 70% sequence identity to a polypeptidewith an amino acid sequence selected from SEQ ID NOs:2-20 or a fragmentthereof.

In another aspect, the detecting is by protein microarray, fluorescencedetection, flow cytometry, microfluidic device, lateral flow assay orimmunoassay. In a specific aspect, the detecting is by lateral flowassay. In an additional aspect, the treatment is selected from the groupconsisting of surgery, radiation, chemotherapy, targeted therapy andimmunotherapy. In a further aspect, the chemotherapy is Cisplatin,Carboplatin, Paclitaxel, Topotecan, docetaxel, ifosfamide,5-fluorouracil, irinotecan, gemcitabine or mitomycin. In certainaspects, the targeted therapy is bevacizumab and the immunotherapy ispembrolizumab.

The biomarkers of the present invention can be used to predict responseto treatment for cervical cancer.

In a further embodiment, the present invention provides methods ofpredicting a response to treatment for a subject having cervical cancerby detecting at least one polypeptide in a sample from a subject;wherein the at least one polypeptide is selected from Farnesylpyrophosphate synthase, neurofibromin I, Glyceraldehyde-3 phosphatedehydrogenase, Protein 1 containing fibronectin domain type III,Eukaryotic initiation factor 4A-I, L-lactate dehydrogenase chain B,Nuclear heterogeneous Ribonucleoprotein A1, 1-like protein 1 polycystickidney disease, heat shock protein cognate 71 kDa, Ankyrin-3, Rho 23GTPase-activating protein, Cytoskeletal Keratin 78 type II, Alpha-3collagen chain (VI), Beta subunit of proteasome type-5, Heterogeneousnuclear ribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 or a fragment thereof, or a polypeptidewith at least about 70% sequence identity to a polypeptide having aminoacid sequence selected from SEQ ID NOs: 1-147 or a fragment thereof, andpredicting a response to treatment based on the detection of the atleast one polypeptide. In one aspect, the at least one polypeptide is apolypeptide with at least about 70% sequence identity to a polypeptidehaving the amino acid sequence selected from SEQ ID NOs:1-20 or afragment thereof.

In one aspect, the at least one polypeptide is Farnesyl pyrophosphatesynthase or a fragment thereof and at least one polypeptide selectedfrom neurofibromin I, Glyceraldehyde-3 phosphate dehydrogenase, Protein1 containing fibronectin domain type III, Eukaryotic initiation factor4A-I, L-lactate dehydrogenase chain B, Nuclear heterogeneousRibonucleoprotein A1, 1-like protein 1 polycystic kidney disease, Heatshock protein cognate 71 kDa, Ankyrin-3, Rho 23 GTPase-activatingprotein, Cytoskeletal Keratin 78 type II, Alpha-3 collagen chain (VI),Beta subunit of proteasome type-5, Heterogeneous nuclearribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 or a fragment thereof. In another aspect,the at least one polypeptide is a polypeptide with at least about 70%sequence identity to a polypeptide having the amino acid sequence of SEQID NO:1 or a fragment thereof and at least one polypeptide with at leastabout 70% sequence identity to a polypeptide having the amino acidsequence selected from SEQ ID NOs:2-20 or a fragment thereof.

In an additional aspect, the detecting is by protein microarray,fluorescence detection, flow cytometry, microfluidic device, lateralflow assay, vertical flow or immunoassay. In a further aspect, thedetecting is by lateral flow assay. In certain aspects, the treatment issurgery, radiation, chemotherapy, targeted therapy and immunotherapy.

The biomarkers of the present application are useful for determining thestage of cervical cancer. Cervical cancer can be classified on differentscales. The Papanicolau system classifies the lesions in degrees ofseverity, from grade I that corresponds to normal cytology, to grade Vthat corresponds to invasive squamous cancer of the cervix. The Richartclassification system classifies the results of a cytology into:Negative, Reactive or not classifiable squamous atypical, HPV infection,Cervical intraepithelial neoplasia (CIN) grades I, II and III, carcinomain situ and invasive squamous cancer of the cervix. Finally, theBethesda nomenclature classifies the results of a cytology as: Negative,ASCUS-ASCH, low-grade intraepithelial lesions, high-gradeintraepithelial lesions and invasive squamous cancer of the cervix.

The FIGO (International Federation of Gynecology and Obstetrics) stagingsystem is used most often for cancers of the female reproductive organs,including cervical cancer. For cervical cancer, the clinical stage isused and is based on the results of the doctor's physical exam,biopsies, imaging tests, and a few other tests that are done in somecases, such as cystoscopy and proctoscopy.

TABLE 2 FIGO Stage Stage description I IA The cancer cells have grownfrom the surface of the cervix into deeper tissues of the cervix. Cancerhas not spread to nearby lymph nodes. Cancer has not spread to distantsites. It has not spread to distant sites. IA1 The area of cancer canonly be seen with a microscope and is less than 3 mm (about ⅛-inch)deep. It has not spread to nearby lymph nodes. It has not spread todistant sites. IA2 The area of cancer can only be seen with a microscopeand is between 3 mm and 5 mm (about ⅕-inch) deep. It not has not spreadto nearby lymph nodes. It has not spread to distant sites. IB Thisincludes stage I cancer that has spread deeper than 5 mm (about ⅕ inch)but is still limited to the cervix. It has not spread to nearby lymphnodes. It has not spread to distant sites. IB1 The cancer is deeper than5 mm (about ⅕-inch) but not more than 2 cm (about ⅘-inch) in size. Ithas not spread to nearby lymph nodes. It has not spread to distantsites. IB2 The cancer is at least 2 cm in size but not larger than 4 cm.It has not spread to nearby lymph nodes. It has not spread to distantsites. IB3 The cancer is at least 4 cm in size and limited to thecervix. It has not spread to nearby lymph nodes. It has not spread todistant sites. II The cancer has grown beyond the cervix and uterus, buthasn't spread to the walls of the pelvis or the lower part of thevagina. It has not spread to nearby lymph nodes. It has not spread todistant sites. IIA The cancer has grown beyond the cervix and uterus buthas not spread into the tissues next to the cervix (called theparametria). It has not spread to nearby lymph nodes. It has not spreadto distant sites. IIA1 The cancer is not larger than 4 cm (about 1⅗inches). It not has not spread to nearby lymph nodes. It has not spreadto distant sites. IIA2 The cancer is 4 cm or larger. It has not spreadto nearby lymph nodes. It has not spread to distant sites. IIB Thecancer has grown beyond the cervix and uterus and has spread into thetissues next to the cervix (the parametria). It has not spread to nearbylymph nodes. It has not spread to distant sites. III The cancer hasspread to the lower part of the vagina or the walls of the pelvis. Thecancer may be blocking the ureters (tubes that carry urine from thekidneys to the bladder). It might or might not have not spread to nearbylymph nodes. It has not spread to distant sites. IIIA The cancer hasspread to the lower part of the vagina but not the walls of the pelvis.It has not spread to nearby lymph nodes. It has not spread to distantsites. IIIB The cancer has grown into the walls of the pelvis and/or isblocking one or both ureters causing kidney problems (calledhydronephrosis). It has not spread to nearby lymph nodes. It has notspread to distant sites. IIIC The cancer can be any size. Imaging testsor a biopsy show the cancer has spread to nearby pelvic lymph nodes(IIIC1) or para-aortic lymph nodes (IIIC2). It has not spread to distantsites. IV The cancer has grown into the bladder or rectum or to far awayorgans like the lungs or bones. IVA The cancer has spread to the bladderor rectum or it is growing out of the pelvis. IVB The cancer has spreadto distant organs outside the pelvic area, such as distant lymph nodes,lungs or bones.

In another embodiment, the present invention provides methods fordetermining the stage of cervical cancer in a subject in need thereof bydetecting at least one polypeptide in a sample from the subject; whereinthe at least one polypeptide is selected from Farnesyl pyrophosphatesynthase, neurofibromin I, Glyceraldehyde-3 phosphate dehydrogenase,Protein 1 containing fibronectin domain type III, Eukaryotic initiationfactor 4A-I, L-lactate dehydrogenase chain B, Nuclear heterogeneousRibonucleoprotein A1, 1-like protein 1 polycystic kidney disease, heatshock protein cognate 71 kDa, Ankyrin-3, Rho 23GTPase-activatingprotein, Cytoskeletal Keratin 78 type II, Alpha-3 collagen chain (VI),Beta subunit of proteasome type-5, Heterogeneous nuclearribonucleoproteins A2/B31, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 or a fragment thereof, or a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence selected from SEQ ID NOs: 1-147 or a fragmentthereof, and determining the stage of cervical cancer in the subjectbased on the detection of the at least one polypeptide. In one aspect,the at least one polypeptide is a polypeptide having the amino acidsequence selected from SEQ ID NOs:1-20 or a fragment thereof.

In one aspect, the at least one polypeptide is Farnesyl pyrophosphatesynthase or a fragment thereof and at least one polypeptide selectedfrom neurofibromin I, Glyceraldehyde-3 phosphate dehydrogenase, Protein1 containing fibronectin domain type III, Eukaryotic initiation factor4A-I, L-lactate dehydrogenase chain B, Nuclear heterogeneousRibonucleoprotein A1, 1-like protein 1 polycystic kidney disease, Heatshock protein cognate 71 kDa, Ankyrin-3, Rho 23 GTPase-activatingprotein, Cytoskeletal Keratin 78 type II, Alpha-3 collagen chain (VI),Beta subunit of proteasome type-5, Heterogeneous nuclearribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 or a fragment thereof. In another aspect,the at least one polypeptide is a polypeptide with at least about 70%sequence identity to a polypeptide having the amino acid sequence of SEQID NO:1 or a fragment thereof and at least one polypeptide with at leastabout 70% sequence identity to a polypeptide having the amino acidsequence selected from SEQ ID NOs:2-20 or a fragment thereof.

In an additional aspect, the detecting is by protein microarray,fluorescence detection, flow cytometry, microfluidic device, lateralflow assay, vertical flow assay or immunoassay. In a specific aspect,the detecting is by lateral flow assay. In a further aspect, the methodalso includes administering a treatment to the subject. In certainaspects, the treatment is surgery, radiation, chemotherapy, targetedtherapy or immunotherapy. In one aspect, the cervical cancer is stage I,stage II, stage III or stage IV.

In one embodiment, the present invention provides a kit with a samplecollection unit; a lateral flow device; and instructions for using thelateral flow device.

Sample collection device is any device that can be used to collect asample. The sample blood, plasma, urine, saliva, sweat, organ biopsy,cerebrospinal fluid (CSF), tear, vaginal fluid, feces, skin, and hair.

A lateral flow device is a simple to use diagnostic device used toconfirm the presence or absence of a target analyte, such as pathogensor biomarkers in a sample. The most commonly known type of lateral flowrapid test strip is the pregnancy test.

Typically lateral flow assays use a device comprises several pads (madeof a series of capillary beds, capable of transporting a fluid): asample pad to receive the liquid sample; a conjugate pad, includingreactive molecules used to visualize positive control, a positive lineand a test line.

For the detection of a target protein, the conjugate pad includesantibodies specific for the target protein conjugated to a detectabletag; a positive line (positive control) is generated comprising fixedanti-anti-target protein antibodies (for example anti IgG antibodies),and a test line was generated comprising fixed anti-target proteinantibodies. When the sample pad is contacted with a sample containingthe target protein, the target protein reacts with the anti-targetprotein antibodies conjugated to a detectable tag in the conjugate pad.As the liquid flows to the test and positive lines, the target proteinpresent in the sample, conjugated with the labeled antibodies reactedwith the fixed anti-target protein antibodies on the test line, andanti-target protein antibodies conjugated to the detectable tag but notconjugated to the target protein reacts with the fixed anti-Igantibodies on the positive line. Both reactions generate a positivereading on the test line, and on the positive line.

In one aspect, the lateral flow device detects at least one polypeptideselected from Farnesyl pyrophosphate synthase, neurofibromin I,Glyceraldehyde-3 phosphate dehydrogenase, Protein 1 containingfibronectin domain type III, Eukaryotic initiation factor 4A-I,L-lactate dehydrogenase chain B, Nuclear heterogeneous RibonucleoproteinA1, 1-like protein 1 polycystic kidney disease, heat shock proteincognate 71 kDa, Ankyrin-3, Rho 23 GTPase-activating protein,Cytoskeletal Keratin 78 type II, Alpha-3 collagen chain (VI), Betasubunit of proteasome type-5, Heterogeneous nuclear ribonucleoproteinsA2/B1, Histone H2B type 1-B, homolog of DnaJ subfamily C member 13, Betaenolase, Glutathione S-transferase P, Glutathione S-transferase Mu 3 ora fragment thereof; or a polypeptide with at least about 70% sequenceidentity to a polypeptide having the amino acid sequence selected fromSEQ ID NOs: 1-147 or a fragment thereof. In one aspect, the at least onepolypeptide is a polypeptide with at least about 70% sequence identityto a polypeptide having the amino acid sequence selected from SEQ IDNOs:1-20 or a fragment thereof.

In an additional aspect, the at least one polypeptide is Farnesylpyrophosphate synthase or a fragment thereof and at least onepolypeptide selected from neurofibromin I, Glyceraldehyde-3 phosphatedehydrogenase, Protein 1 containing fibronectin domain type III,Eukaryotic initiation factor 4A-I, L-lactate dehydrogenase chain B,Nuclear heterogeneous Ribonucleoprotein A1, 1-like protein 1 polycystickidney disease, heat shock protein cognate 71 kDa, Ankyrin-3, Rho 23GTPase-activating protein, Cytoskeletal Keratin 78 type II, Alph-3collagen chain (VI), Beta subunit of proteasome type-5, Heterogeneousnuclear ribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 or a fragment thereof. In a furtheraspect, the at least one polypeptide with at least about 70% sequenceidentity to a polypeptide having the amino acid sequence of SEQ ID NO:1or a fragment thereof and at least one polypeptide selected from apolypeptide with at least about 70% sequence identity to a polypeptidehaving the amino acid sequence selected from SEQ ID NO:2-20 or afragment thereof.

In another aspect, the lateral flow device detects the at least onepolypeptide by an immunoassay. In one aspect, the sample collection unitcollects a blood sample.

In an additional embodiment, the present invention provides a use of thedetection of at least one polypeptide for the diagnosis of cervicalcancer in a subject in need thereof, wherein the at least onepolypeptide is selected from Farnesyl pyrophosphate synthase,neurofibromin I, Glyceraldehyde-3 phosphate dehydrogenase, Protein 1containing fibronectin domain type III, Eukaryotic initiation factor4A-I, L-lactate dehydrogenase chain B, Nuclear heterogeneousRibonucleoprotein A1, 1-like protein 1 polycystic kidney disease, heatshock protein cognate 71 kDa, Ankyrin-3, Rho 23 GTPase-activatingprotein, Cytoskeletal Keratin 78 type II, Alpha-3 collagen chain (VI),Beta subunit of proteasome type-5, Heterogeneous nuclearribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 or a fragment thereof, or a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence selected from SEQ ID NOs: 1-147 or a fragmentthereof. In one aspect, the at least one polypeptide is a polypeptidewith at least about 70% sequence identity to a polypeptide having theamino acid sequence selected from SEQ ID NOs:1-20 or a fragment thereof.

In a further aspect, the at least one polypeptide is detected in asample from the subject and the sample is a blood sample. In anotheraspect, the at least one polypeptide is Farnesyl pyrophosphate synthaseor a fragment thereof and at least one polypeptide selected fromneurofibromin I, Glyceraldehyde-3 phosphate dehydrogenase, Protein 1containing fibronectin domain type III, Eukaryotic initiation factor4A-I, L-lactate dehydrogenase chain B, Nuclear heterogeneousRibonucleoprotein A1, 1-like protein 1 polycystic kidney disease, heatshock protein cognate 71 kDa, Ankyrin-3, Rho 23 GTPase-activatingprotein, Cytoskeletal Keratin 78 type II, Alph-3 collagen chain (VI),Beta subunit of proteasome type-5, Heterogeneous nuclearribonucleoproteins A2/B1, Histone H2B type 1-B, homolog of DnaJsubfamily C member 13, Beta enolase, Glutathione S-transferase P,Glutathione S-transferase Mu 3 or a fragment thereof. In one aspect, theat least one polypeptide is a polypeptide with at least about 70%sequence identity to a polypeptide having the amino acid sequence of SEQID NO:1 or a fragment thereof and at least one polypeptide with at leastabout 70% sequence identity to a polypeptide having the amino acidsequence selected from SEQ ID NOs:2-20 or a fragment thereof.

In another aspect, the detecting is by protein microarray, fluorescencedetection, flow cytometry, microfluidic device, lateral flow assay,vertical flow assay or immunoassay. In certain aspects, the detecting isby lateral flow assay.

The following examples are provided to further illustrate theembodiments of the present invention, but are not intended to limit thescope of the invention. While they are typical of those that might beused, other procedures, methodologies, or techniques known to thoseskilled in the art may alternatively be used.

EXAMPLES Example 1 Secretome Analysis of Cervical Cancer Cell Lines

In order to identify cervical cancer biomarkers, a secretome analysis ofcervical cancer cells was performed using cervical cancer cell line HeLa(cervical adenocarcinoma, positive for HPV18), SiHa cells (grade II,squamous cell cervical carcinoma, positive for HPV16), and C-33A(cervical carcinoma, negative for HPV) and the HaCaT cell line as anegative control. These lines were selected because they represent themost frequent histological types and viral genotypes in cervicalintraepithelial lesions and in CC; and were either cultured (in vitrosecretome), or inoculated into mice (ex vivo secretome).

HeLa and SiHa cells were cultured in serum-free Advanced RPMI 1640supplemented with 2 mM L-glutamine and Penicillin-Streptomycin at 1%v/v, at 37° C. and with 5% C02 until a 70-80% confluence was reached.The cells were washed three times with sterile physiological solution(0.9% NaCl (w/v)). As illustrated in FIG. 2, there was no significantgrowth differences between the cells at day 6, when the cells reached70% confluence.

For in vitro secretome analysis, the cells were then incubated inserum-free RPMI 1640 without phenol red (Gibco, Invitrogen) for 20hours, and the medium collected and centrifuged at 1,500 g for 5minutes. The supernatant was passed through a 0.22 μm size PVDF membrane(Millex, Millipore) and stored at −70° C. until further use (see FIG.1).

For in vitro secretome analysis, the cells were then incubated inserum-free RPMI 1640 without phenol red for 20 hours, and the mediumcollected and centrifuged at 1,500 g for 5 minutes. The supernatant waspassed through a 0.22 μm size PVDF membrane and stored at −70° C. untilfurther use (see FIG. 1).

For the ex vivo secretome analysis, the secreted proteins were collectedfrom tumors collected on female Nu/Nu mice (4-6 weeks) inoculated with10⁷ HeLa or SiHa cells. After 30, 45 and 50 days after inoculation, thetumors were collected (triplicate) and washed 3 times with 50 mL ofphysiological solution and then incubated for 20 hours with serum freeRMPI medium without phenol red. The medium was removed and centrifugedat 1,500×g for 5 minutes, the supernatant was passed through a 0.22 μmpore size membrane PVDF membrane and stored at −70° C. until further use(see FIG. 1). The secreted proteins collected in vitro and ex vivo werelyophilized and resuspended in 1 mL of ultrapure water. Proteinisolation was performed by phenol extraction.

To identify the proteins secreted by the different cell lines, theproteins were separated by electrophoresis on an SDS-PAGE matrix andstained with bright Coomassie blue (see FIG. 3A). Each lane containing30 μg protein was cut into 20 lines throughout the column, the proteinscontained were extracted and digested with trypsin. The generatedpeptides were analyzed in a nano LC-MS/MS system. The identification ofpeptides and proteins was performed using the MASCOT search enginethrough the MASCOT Distiller interface. The databases consulted wereSwiss-Prot and NCBI.

1662 secretome proteins were identified (see FIG. 3B). As illustrated inthe Venn diagram of FIG. 3C, showing the intersection between the sharedproteins of the CC cell lines and their negative control, 20 proteinswere shared in the 3 CC cell lines and absent in the negative control(see Table 3). These proteins were candidates for use in a rapiddiagnostic test. In addition to the qualitative study, a quantitativeanalysis of 200 secreted proteins was performed using the label-freequantification (LFQ) technique. As shown in FIG. 4A, 92 proteins werefound over-expressed in the 3 CC cell lines according to their Log 2value (CC cell lines vs. HaCaT). For HeLa: 45 over-expressed proteins,SiHa: 35 over-expressed proteins, C-33A: 12 over-expressed proteins. Asshown in FIG. 4B, 6 secreted proteins: Glyceraldehyde-3-phosphatedehydrogenase, cognate heat shock protein 71 kDa, L-lactatedehydrogenase chain B, beta subunit of proteasome type-5 and nuclearribonucleoproteins heterogeneous A2/B1 were found over expressed in the3 CC cell lines compared to its negative control. Further, and as shownin FIG. 4C (which represents the Heat map of proteins expressed in celllines, where the complete linkage hierarchical grouping shows the valuesin Log 2 (protein expression/HSP71) on a color scale), the hierarchyanalysis by cluster in the heat map revealed a similarity in proteinexpression between the HPV positive cell lines (SiHa and HeLa). Theseanalyzes allowed obtaining a set of common over-expressed proteins forthe HPV and CC lines.

TABLE 3 Gene Protein Name NF1 NF1_HUMAN Neurofibromin GAPDH G3P_HUMANGlyceraldehyde-3 phosphate dehydrogenase FNDC1 FNDC1_HUMAN Protein 1containing fibronectin domain type III EIF4A1 IF4A1_HUMAN Eukaryoticinitiation factor 4A-I LDHB LDHB_HUMAN L-lactate dehydrogenase chain BHNRNPA1 ROA1_HUMAN Nuclear heterogeneous Ribo- nucleoprotein A1 PKD1L1PK1L1_HUMAN Polycystic kidney disease protein 1-like 1 FDPS FPPS_HUMANFarnesyl pyrophosphate synthase HSPA8 HSP7C_HUMAN Heat Shock ProteinCognate 71 kDa ANK3 ANK3_HUMAN Ankirin-3 ARHGAP23 ARHG23_HUMAN Rho 23GTPase-activating protein KRT78 K2C78_HUMAN Cytoskeletal Keratin 78 typeII COL6A3 CO6A3_HUMAN Alpha-3 collagen chain (VI) PSMB5 PSB5_HUMAN Betasubunit of proteasome type-5 HNRNPA2B1 ROA2_HUMAN Heterogeneous nuclearribo- nucleoproteins A2/B1 HIST1H2BB H2B1B_HUMAN Histone H2B type 1-BRME8 DNAJC13 homolog of DnaJ subfamily C member 13 ENO3 ENOB_HUMAN Betaenolase GSTP1 GSTP1_HUMAN Glutathione S-transferase P GSTM3 GSTM3_HUMANGlutathione S-transferase Mu 3

Example 2 Detection of Cervical Tumors

To evaluate if the proteins identified in the in vitro secretomeanalysis could be used as biomarkers for the detection of cervicaltumors, female mice were inoculated with DC cells to develop tumors, andsecreted proteins were measured in the serum of the animals (see FIG.5A).

A cohort of 9 mice was generated, with 3 different cell lines and theircontrols established at 3 different times of the PT (tumor progression).The mice were inoculated with 10⁷ cells DC tumor cell lines (either HeLaor SiHa cells), and the sera were collected 30, 45 and 50 days postinoculation. Sera were subjected to a Western blot with 20 μg proteinper sample. The tests were performed in triplicate and were presented asmeans (±standard deviation). A statistical Student's t-test wasperformed.

As illustrated in FIG. 5B, illustrating the example of the detection ofone of the protein of the secretome identified in Example 1; it wasfound by Western blot that the farnesyl pyrophosphate synthase proteinwas detectable in the sera of the mice inoculated with HeLa and SiHa(sera from uninoculated mice were used as controls). The protein wasfound expressed in all sera of the tumor-bearing mice, an as detailed inFIG. 5C, the level of expression was found to increase levels over timein the sera of the mice inoculated with SiHa.

The validation of the protein Farnesyl pyrophosphate synthase as abiomarker in sera was further performed in serum obtain from patientswith CC:

The serum of 10 patients with CC and 10 negative controls for CC weretested, and the expression of Farnesyl pyrophosphate synthase wasassessed by western blot. As illustrated in FIGS. 6A and 6B, all thepatients analyzed presented Farnesyl pyrophosphate synthase expression,and no expression of Farnesyl pyrophosphate synthase was found in thesera of the controls. It was also observed that the level of expressionwas variable among patients (see FIG. 6C). As further illustrated inFIGS. 7A-7C, Ankyrin-3 was also demonstrated as a promising biomarkerthat can be used to detect cervical cancer in the serum of patient, bypresenting with a significantly higher level of expression as comparedto the serum of control patients. The proteome analysis of thesecretome, identified 20 proteins present in CC cells and absent innegative control; and among the 6 overexpressed proteins Farnesylpyrophosphate synthase and Ankyrin-3, used an a proof-of-principle wereused to demonstrate that its level of expression (i.e., overexpression)could be analyzed in the serum of patient, showing that these proteinsmay be a useful promising candidate in the identification of thisdisease.

Example 3 Detection of Pre-Cancerous Cervical Lesions

To evaluate if the proteins identified in the in vitro secretomeanalysis could be used as biomarkers to detect pre-cancerous cervicallesions, the serum of patient presenting pre-cancerous cervical lesionswere assessed for the detection of the biomarkers by western blot.

The serum of patients with pre-neoplasic lesions, with cervical canceror with no lesions (control) were collected and analyzed for theexpression of Ankyrin-3, Rho 23 GTPase-activating protein, Alpha-3collagen chain (IV), Beta enolase, Farnesyl pyrophosphate synthase,Histone H2B type 1-BB, Heterogeneous nuclear ribonucleoproteins A2/B1,Heat shock protein cognate 71 kDa, Cytoskeletal Keratin 78 type II, Betasubunit of proteasome type-5 and homolog of DnaJ subfamily C member 13.

As illustrated in FIGS. 8A-8C, it was demonstrated that Farnesylpyrophosphate synthase was detectable in the serum of patient havingpre-cancerous cervical lesions L1 and L2, as compared to control sera.Specifically, it was found that Farnesyl pyrophosphate synthaseexpression was 12-times higher in the serum of patient withpre-cancerous lesions as compared to control (see FIG. 8D),demonstrating that pre-cancerous lesions, as well as cancerous (seeexample 2) can be detected in the serum of patient, by detecting theexpression of Farnesyl pyrophosphate synthase in the serum, which can beused as a biomarker for the detection of precancerous cervical lesions.

As illustrated in FIGS. 9A-9C, it was demonstrated that Ankyrin-3 wasdetectable in the serum of patient having pre-cancerous cervical lesionsL1 and L2, as compared to control sera. Specifically, it was found thatAnkirin-3 expression was 10-times higher in the serum of patient withpre-cancerous lesions as compared to control (see FIG. 9D),demonstrating that pre-cancerous lesions, as well as cancerous (seeexample 2) can be detected in the serum of patient, by detecting theexpression of Ankyrin-3 in the serum, which can be used as a biomarkerfor the detection of precancerous cervical lesions.

Similar results were obtained when the quantification of the proteinswas intended by ELISA instead of by Western blot.

Example 4 Lateral Flow Assay for the Detection of Cervical Tumor andPrecancerous Lesions

For lateral flow assay, strip containing dried spot antibodies for testlines and positive lines were prepared, and samples collected frompatients were tested for the detection of Farnesyl pyrophosphatesynthase.

Blood samples collected from patients were either directly diluted inChase buffer at a 1/5 dilution rate (for serum sample), or furtherabsorbed onto blood separator pad (for whole blood sample) prior tobeing diluted in Chase buffer. 70 ul of diluted sample were used foreach test.

The strip was assembled by removing the membrane section of theprotective cover and apply CN-95 membrane. Two pieces of protectivecover were removed from sections above where the nitrocellulose wasplaced. A 21 mm wick pad was then applied by aligning the top of thewick pad with the top of the backing card edge, and the excess backingcard below the membrane, was cut off, leaving just the membrane and wickpad. The strips were cut to 5.0 mm width using Kinematic Guillotine andpackage in pouch with desiccant.

The test and positive lines were then prepared on the strip by spotdrying antibodies. 1.0 μL of test line antibody was applied around 9 mmfrom the bottom of the nitrocellulose on 20 pre-cut test strips; and 1μL of control line antibody was applied around 15 mm up from the bottomof the nitrocellulose on each pre-cut and spotted test strip. The stripswere tapped down on piece of paper and place in 40 C oven for 1-hour.Once dried, the strips were packaged with desiccant. The antibodies werepreviously conjugated with gold (using colloidal gold) or biotinylated.

For the assay, each conjugate were diluted to 0.02% solids using 50 mMborate, 0.5% casein, 1% tween. 8 μL of conjugate were pipetted intoglass tube, followed by 10 μL of serum. Half of the strip was place inglass tube, with bottom of nitro submerged in the testing solution toallow conjugate/serum solution to run up strip. 50 μL of 1×PBS, 1% tween20 were then added to glass tube to chase sample.

Using the FLI assay described herein, it was demonstrated that Farnesylpyrophosphate synthase expression level could be determined a liquidsample collected from a patient, such as the serum, and that thereforepre-cancerous lesions of low and high grade, as well as cancerouscervical lesions could be detected using the device.

Although the invention has been described with reference to the aboveexamples, it will be understood that modifications and variations areencompassed within the spirit and scope of the invention. Accordingly,the invention is limited only by the following claims.

What is claimed is:
 1. A method comprising: a) detecting increasedexpression farnesyl pyrophosphate synthase in a sample from a subject;b) performing a biopsy to diagnose cervical cancer or a cervical lesion;and c) administering a treatment to the subject, wherein the treatmentis selected from the group consisting of cisplatin, carboplatin,paclitaxel, topotecan, docetaxel, ifosfamide, 5-fluorouracil,irinotecan, gemcitabine, mitomycin, bevacizumab and pembrolizumab. 2.The method of claim 1, wherein the sample is a blood sample.
 3. Themethod of claim 1, wherein the subject is human.
 4. The method of claim1, further comprising detecting Ankyrin-3.
 5. The method of claim 1,wherein the detecting is by protein microarray, fluorescence detection,flow cytometry, microfluidic device, lateral flow assay, vertical flowassay or immunoassay.
 6. The method of claim 5, wherein the detecting isby lateral flow.
 7. The method of claim 1, further comprising performinga Pap smear.